View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_27 (Length: 309)
Name: NF14776_high_27
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 33522271 - 33522556
Alignment:
| Q |
2 |
ctaacttcttttcagaatacaccttaattacctcgatgaatccaactaattttacgagctttctcccccaccaacaaaaaatgatttaaaaagggattca |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33522271 |
ctaacttcttttcagaatacaccttaattaccccgatgaatccaactaattttacgagcttcctcccccaccaacaaaaaatgatttaaaaagggattca |
33522370 |
T |
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| Q |
102 |
atctgcatgtgcacgcctcgtagaaggaaagaaaataaacgagaagtgaagacatgacatatttaagcatgacaagtcgaccaccacccatggaaatttt |
201 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33522371 |
atctgcatgtggacacctcgtagaaggaaagaaaataaacgagaagtgaagacatgacatatttaagcatgacaagtcgaccaccacccatggaaatttt |
33522470 |
T |
|
| Q |
202 |
tcactcttccaattagataatctttttataatgttctcatttaacgagagagctaaaacaacaaacaccgagaattgccaccaata |
287 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33522471 |
ttactcttccaattatataatctttttataatgttctcatttaacgagagagctaaaacaacaaacaccgagaattgccaccaata |
33522556 |
T |
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