View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_28 (Length: 304)
Name: NF14776_high_28
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 37435706 - 37435983
Alignment:
| Q |
16 |
ctacccacgtttattaaagggaatgcatcatttgctcaataaatattttaaggttatctcataccaaaaggatggagagtgctaatatgggcgagagcca |
115 |
Q |
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||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37435706 |
ctaccaacatttattaaagggaatgcatcatttgctcaata----ttttaaggttatctcataccaaaaggatggagagtgctaatatgggcgagagcca |
37435801 |
T |
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| Q |
116 |
ttcatatggattctgaatattatccaaatcctaaagaatttaatccttctagatggaaagtaagttggattgatattttacnnnnnnnactcaagttata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37435802 |
ttcatatggattctgaatattatccaaatcctaaagaatttaatccttctagatggaaagtaagttggattgatattttactttttttactcaagttata |
37435901 |
T |
|
| Q |
216 |
ttattatctatctatttacgtttttaaatgtaagtagataatattttttgaaacagttagctttaaatcatataagagtattat |
299 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37435902 |
ttattatctatctatt--cgtttttaaatgtaagtagataatattttttgaaacagttagctttaaatcatataagagtattat |
37435983 |
T |
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