View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14776_high_30 (Length: 295)
Name: NF14776_high_30
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 36100014 - 36100247
Alignment:
| Q |
19 |
atccaattggttatccaaacaaaagtgacacctattaattaggcaggctactttcttataactaagtaatcttctggtggtgtaacacaaggcccagttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100014 |
atccaattggttatccaaacaaaagtgacccctattaattaggcagaccactttcttataactaagtaatcttctggtggtgtaacacaaggcccagttc |
36100113 |
T |
|
| Q |
119 |
ctaaagctctaatttgtagcttcagtcctgttgttattttccaccgttcaattgtctaattgtatgccatttttaaacacatgcttaattctctacattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100114 |
ctaaagctctaatttgtagcttcagtcctgttgttattttccaccgttaaattgtctaattgtatgccatttttaaacacatgcttaattctctacattg |
36100213 |
T |
|
| Q |
219 |
gttaacagatttctatcataagtattcatgtata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36100214 |
gttaacagatttctatcataagtattcatgtata |
36100247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University