View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14776_high_32 (Length: 272)
Name: NF14776_high_32
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 31760334 - 31760573
Alignment:
| Q |
17 |
ataaacatttagcaataatcacaatccaaatagtcacacaaataaaacttaatacttttgaaatgaaacataataataaatctcacatttaacagactcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31760334 |
ataaacatttagcaataatcacaatccaaatagtcacacaaataaaacttaatacttttgaaatgaaacataataataaatctcacatttaacagactcc |
31760433 |
T |
|
| Q |
117 |
ttgacaattcaagattctgttttgaacctagaattcttattctcaacaatcaacatattttgataatttatagaaaatatnnnnnnnttccctcaacttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31760434 |
ttgacaattcaagattctgttttgaacctagaattcttattctcaacaatcaacatattttgataatttatagaaaatataaaaaaattccctcaacttt |
31760533 |
T |
|
| Q |
217 |
atattaaacaattaatcaatcattatccttcttcattcat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31760534 |
atattaaacaattaatcaatcattatccttcttcattcat |
31760573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 31750352 - 31750146
Alignment:
| Q |
47 |
tagtcacacaaataaaacttaatacttttgaaatgaaacataataa--taaatctcacatttaacagactccttgacaattcaagattctgttttgaacc |
144 |
Q |
| |
|
|||||||||| |||||| |||| ||| ||||||||||| | ||||| ||||| |||| ||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
31750352 |
tagtcacacagataaaatttaagactcttgaaatgaaa-acaataaattaaatatcacgtttaacagactccttaacaattcatggttctgttttgaacc |
31750254 |
T |
|
| Q |
145 |
tagaattcttattctcaacaatcaacatattttgataatttatagaaaatatnnnnnnnttccctcaacttca-tattaaacaattaatcaatcattatc |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||| ||| | || || |||||| | |||||||||||||||||||| ||||| |
|
|
| T |
31750253 |
tagaattcttattctcaacaatcaaaataattgaataatttatagagaattt--aaaaattgccacaactttattattaaacaattaatcaatctttatc |
31750156 |
T |
|
| Q |
244 |
cttcttcatt |
253 |
Q |
| |
|
|||||||||| |
|
|
| T |
31750155 |
cttcttcatt |
31750146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 31752818 - 31752961
Alignment:
| Q |
112 |
actccttgacaattcaagattctgttttgaacctagaattcttattctcaacaatcaacatattttgataatttatagaaaatatnnnnnnnttccctca |
211 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| |||| |||||||||||||||| ||||||||||||||||| |||| |||||||| || || || |
|
|
| T |
31752818 |
actccttgactattcaaggtcctgttttgaatctagtattcttattctcaacattcaacatattttgataagttatcgaaaatat-aaaacattaccaca |
31752916 |
T |
|
| Q |
212 |
acttcatattaaacaattaatcaatcattatccttcttcattcat |
256 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
31752917 |
actttatattaaacaataaatcaatctttatccttcttcattcat |
31752961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 31767141 - 31767294
Alignment:
| Q |
99 |
tcacatttaacagactccttgacaattcaagattctgttttgaacctagaattcttattctcaacaatcaacatattttgataatttatagaaaatatnn |
198 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |
|
|
| T |
31767141 |
tcacgtttaacagactccttaacaattcatggttctgttttgaacctagaattattattctcaacaatcaaaatatttgaataatttatagagcata--a |
31767238 |
T |
|
| Q |
199 |
nnnnnttccctcaacttcatattaaacaattaatcaatcattatccttcttcattc |
254 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31767239 |
aaaaattggcacaactttatattaaacaattaatcaatctttatctttcttcattc |
31767294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University