View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_high_33 (Length: 272)

Name: NF14776_high_33

Description: NF14776

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14776_high_33

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 154; E-Value: 9e-82

Query Start/End: Original strand, 103 - 256

Target Start/End: Original strand, 37676564 - 37676717

Alignment:

Q	103	cttccacttcccattcatatctctcccaaaccagacacagttttcgttttcccacaattaagttaccttctttcagcaacaataaccgtaataaccaccg	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37676564	cttccacttcccattcatatctctcccaaaccagacacagttttcgttttcccacaattaagttaccttctttcagcaacaataaccgtaataaccaccg	37676663	T

Q	203	tgtcttctttaaagtctcagcttcatcttcatcttcgtttcaagctcttatatt	256	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37676664	tgtcttctttaaagtctcagcttcatcttcatcttcgtttcaagctcttatatt	37676717	T

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Target: chr8; HSP #2

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 14 - 74

Target Start/End: Original strand, 37676475 - 37676535

Alignment:

Q	14	gatgaataaagtgatgatgaagatgactggttaatggttaatgaacatgaccatggcttct	74	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37676475	gatgaataaagtgatgatgaagatgaatggttaatggttaatgaacatgaccatggcttct	37676535	T

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