View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_41 (Length: 224)
Name: NF14776_high_41
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_41 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 12484 - 12277
Alignment:
| Q |
5 |
ctaaaagccacgtgccacaccaacataacaagaaaacagagaaacaatattttctaagatctgatgtgcaggagcttgtgtgcatcgtgcaatagctttt |
104 |
Q |
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| T |
12484 |
ctaatagccacgtgccacaccaacataacaagaaaacagagaaacaatgttttctaagatctgatgtgcaggagcttgtgtgcatcgtgcaatagctttt |
12385 |
T |
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| Q |
105 |
tcgcaaaattagggtatacgcgcctataaatagagaggtcttacctcactcgaaaaagacactctgccaacaagaaaaggtgaaatc--gatttgcagtg |
202 |
Q |
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| T |
12384 |
tcgcaaaattagggtttactcgcctataaatagagaggtcttaccttacttgaaaaagacactctaccaacaagaaaaggtgaaatcgtgatttgcagtg |
12285 |
T |
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| Q |
203 |
aggtatat |
210 |
Q |
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|||||||| |
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| T |
12284 |
aggtatat |
12277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 6623062 - 6622855
Alignment:
| Q |
5 |
ctaaaagccacgtgccacaccaacataacaagaaaacagagaaacaatattttctaagatctgatgtgcaggagcttgtgtgcatcgtgcaatagctttt |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6623062 |
ctaatagccacgtgccacaccaacataacaagaaaacagagaaacaatgttttctaagatctgatgtgcaggagcttgtgtgcatcgtgcaatagctttt |
6622963 |
T |
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| Q |
105 |
tcgcaaaattagggtatacgcgcctataaatagagaggtcttacctcactcgaaaaagacactctgccaacaagaaaaggtgaaatc--gatttgcagtg |
202 |
Q |
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| T |
6622962 |
tcgcaaaattagggtttactcgcctataaatagagaggtcttaccttacttgaaaaagacactctaccaacaagaaaaggtgaaatcgtgatttgcagtg |
6622863 |
T |
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| Q |
203 |
aggtatat |
210 |
Q |
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|||||||| |
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| T |
6622862 |
aggtatat |
6622855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 6789831 - 6789623
Alignment:
| Q |
4 |
cctaaaagccacgtgccacaccaacataacaagaaaacagagaaacaatattttctaagatctgatgtgcaggagcttgtgtgcatcgtgcaatagcttt |
103 |
Q |
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||||||||||| || | ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||| || |||||| |||||| |||||| || | |
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| T |
6789831 |
cctaaaagccaaatgtcgcaccaacataacaagaaaacagacaaacgatattgtctaagatgtgatgtgcatgaacttgtgcgcatcgcgcaataactgt |
6789732 |
T |
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| Q |
104 |
ttcgcaaaattagggtatacgcgcctataaatagagaggtcttacctcactcgaaaaagacactctgccaacaagaaaaggtgaaatc--gatttgcagt |
201 |
Q |
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|||| |||||| |||| ||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
6789731 |
ttcgaaaaatttgggtttactcacctataaatagagaggtcttacctcacttgaaaaagacactctaccaacaagaaaaggtgaaatcgtgatttgcagt |
6789632 |
T |
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| Q |
202 |
gaggtatat |
210 |
Q |
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||||||||| |
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| T |
6789631 |
gaggtatat |
6789623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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