View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_44 (Length: 213)
Name: NF14776_high_44
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 37012744 - 37012860
Alignment:
| Q |
79 |
catcgtttcataatactgtcgtctctcatactgatgcaaagtgtggtgatgcaataggaaatcgaatggtgatgttgtaggtgtgagacaatatccaaga |
178 |
Q |
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| T |
37012744 |
catcgtttcataatactgtcgtctctcatactgattcaaagtgtggtgatacaataggaaatcgaatggtgatgttgtag--gtgagacaataaccaata |
37012841 |
T |
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| Q |
179 |
taaagaatttgagaaaaat |
197 |
Q |
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||||||||||||||||||| |
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| T |
37012842 |
taaagaatttgagaaaaat |
37012860 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 37012717 - 37012747
Alignment:
| Q |
1 |
attattctggtggtgaagccaagaattcatc |
31 |
Q |
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| T |
37012717 |
attattctggtggtgaagccaagaattcatc |
37012747 |
T |
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