View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14776_high_9 (Length: 427)
Name: NF14776_high_9
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 43780255 - 43779873
Alignment:
| Q |
30 |
gagtatatagaaaatgactgattttcataaataactccttaaatgaaaatcaacaatattattgagaacttgaaatcaataattaaggaagagaaatatt |
129 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | || || |||||| ||||||||| |
|
|
| T |
43780255 |
gagtataaagaaaatgacagattttcataaataactccttaaatgcaaatcaacaatattattgagaacatagcataaaaaattaaa----agaaatatt |
43780160 |
T |
|
| Q |
130 |
caaaggcaaaactcaacagcaacacagttaaagatctcacgtcaaaaccgaatcactgagtggctgagcacagctatttttgtcaaactctgaatattgc |
229 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
43780159 |
caaagggaaaactccacagaaacacagttaaagatctcacgtccaaaccggatcacttagtggctgagcacggctatttttgtcaaactctggatactgc |
43780060 |
T |
|
| Q |
230 |
agtagcagaggcgttacgacttcagactctgcacatatctcacattcccttgcctgcttgtcagatgacatattcgaaggatctttaggtgattcaggct |
329 |
Q |
| |
|
|||| | ||||| ||| |||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43780059 |
agtaacggaggcattatgacttcagactctgtatatatctcacattccattgcctgcatgtcagatgacatattcgaaggatctttaggtgattcaggct |
43779960 |
T |
|
| Q |
330 |
gcttataaaaaacattttcattctcaaggattggcagtatcttctcagtgtactttttggcaaggcatccaacactttcaccttcat |
416 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43779959 |
gcttgcaaaaaacattttcattctcaaggattggcagtatcatctcagtgttctttttggcaaggcatccaacactttcaccttcat |
43779873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University