View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_1 (Length: 762)
Name: NF14776_low_1
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 150 - 410
Target Start/End: Original strand, 4709249 - 4709509
Alignment:
| Q |
150 |
tgtgttttggcggtgttaacatttcactgggtgaccttatctacttcgaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
249 |
Q |
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| T |
4709249 |
tgtgttttggcggtgttaacatttcactgggcgaccttatatacttcaaatgtatttgattgttttaatttttgggttaactatacctacgactaatact |
4709348 |
T |
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| Q |
250 |
tttctccataggtatagcttttctatacctacgatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
349 |
Q |
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| T |
4709349 |
tttctccataggtatagcttttctatacctactatttaaaatccgtcactataaacctccgttggcatatgccattttcttgcagtagtaattggacaaa |
4709448 |
T |
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| Q |
350 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
410 |
Q |
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| T |
4709449 |
catatataatcaacatcaattgcttgaaagacaaatgcgttactcatcgaagtggagatgg |
4709509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 493 - 746
Target Start/End: Original strand, 4709593 - 4709846
Alignment:
| Q |
493 |
aatattgacttgtttctttaaagttgtcccgtctnnnnnnnncaatcaacctaatctctccccaaaaatagaccatcaactctccaaagttcttctgttt |
592 |
Q |
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| T |
4709593 |
aatattgacttgtttctttaaagttgtcccgtctaaaaaaaacaatcaacctaatctctccccaaaaatagaccatcaactctccaaagttcttctgttt |
4709692 |
T |
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| Q |
593 |
ctaaaaaatacttttcaatgtctgtgtcttatgcagggtcactgtaagccagaatacttcccgtaatgcaaaatcacaaactccaaattttatctcatta |
692 |
Q |
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| T |
4709693 |
ctaaaaaatacttttcaatgtctgtgtcttatgcagggtcactgtaagccagaatacttcccgtaatgcaaaatcacaaactccaaattttatctcatta |
4709792 |
T |
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| Q |
693 |
tatgctcttcctggtgtcttgtatattttctgcatcaaattgtttgtggtatgt |
746 |
Q |
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| T |
4709793 |
tatgctcttcctggtgtcttgtatattttctgcatcaaattgtttgtggtatgt |
4709846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 674 - 737
Target Start/End: Original strand, 4844248 - 4844311
Alignment:
| Q |
674 |
tccaaattttatctcattatatgctcttcctggtgtcttgtatattttctgcatcaaattgttt |
737 |
Q |
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| T |
4844248 |
tccaaattttatctcattatatgctcttcttggtgtcttctacattttctgcctcaaattgttt |
4844311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 662 - 740
Target Start/End: Original strand, 39251162 - 39251241
Alignment:
| Q |
662 |
aaaatcacaaactccaaatttt-atctcattatatgctcttcctggtgtcttgtatattttctgcatcaaattgtttgtg |
740 |
Q |
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| T |
39251162 |
aaaatcacaaactccaagtttttatctcgttatatgttcttcttgttgtcttgtatgttttctgcatcaaattgtctgtg |
39251241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 645 - 740
Target Start/End: Original strand, 39262221 - 39262318
Alignment:
| Q |
645 |
aatacttcccgtaatgcaaaatcacaaactccaaatttt--atctcattatatgctcttcctggtgtcttgtatattttctgcatcaaattgtttgtg |
740 |
Q |
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| T |
39262221 |
aatacctcccgtaaggtaaaatcacaaacttcaatttttttatctcgttatatgctcttcttgttgtcttgtatgttttcttcatcaaattgtctgtg |
39262318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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