View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_low_17 (Length: 403)

Name: NF14776_low_17
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14776_low_17
NF14776_low_17
[»] chr8 (6 HSPs)
chr8 (4-197)||(11177156-11177349)
chr8 (295-385)||(11176971-11177061)
chr8 (295-385)||(11157225-11157315)
chr8 (34-153)||(11157449-11157562)
chr8 (34-188)||(11164365-11164501)
chr8 (337-385)||(11164199-11164247)
[»] chr3 (1 HSPs)
chr3 (34-83)||(4703676-4703725)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 11177349 - 11177156
Alignment:
Q  4 ggcactgcctcaatgtcgcacccattaaaatttctcttcaatcctttgttgccgccactattattattaactaccttcttttttagattatcatcaagca 103  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11177349 ggcactgcctcaatgtcgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttctttttttgattatcatcaagca 11177250  T
Q  104 ccatcatatcaaaattttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagtttccatcatcgaagccacactgtttatttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11177249 ccatcatatcaaaattttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagtttccatcatcgaagccacactgtttatttt 11177156  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 11177061 - 11176971
Alignment:
Q  295 cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatcccc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11177061 cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatcccc 11176971  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 11157315 - 11157225
Alignment:
Q  295 cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatcccc 385  Q
    |||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  11157315 cctaatgggttttgcaagttaagtaaaaaaggtaacgaattgggatctagatttatgtttacctttcatcaagagctccaaaggaatcccc 11157225  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 11157562 - 11157449
Alignment:
Q  34 tttctcttcaatcctttgttgccgccactattattattaactaccttcttttttagattatcatcaagcaccatcatatcaaaattttctatcgcaggt- 132  Q
    ||||||||||| |||||||||| ||||| |||||||||||| |||||         ||||||||||| ||||||||| ||||||||||| |||||||||     
T  11157562 tttctcttcaaacctttgttgctgccaccattattattaaccacctt---------attatcatcaaacaccatcatttcaaaattttcaatcgcaggtt 11157472  T
Q  133 --ctattatcaatatcaacaaca 153  Q
       | ||||||||||||||||||    
T  11157471 tgttgttatcaatatcaacaaca 11157449  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 11164501 - 11164365
Alignment:
Q  34 tttctcttcaatcctttgttgccgccactattattattaactaccttcttttttagattatcatcaagcaccatcatatcaaaattttctatcgcaggtc 133  Q
    ||||||||||| |||||| ||| ||||| |||||||||||| |||||         |||||| |||| |||||||||||||||| |||| ||| |||||     
T  11164501 tttctcttcaaacctttgctgctgccaccattattattaaccacctt---------attatcgtcaaacaccatcatatcaaaagtttcaatcccaggtt 11164411  T
Q  134 tattatcaatatcaacaacaccttcagcttcagtttccatcatcgaagccacact 188  Q
    | ||||||| ||||||||         ||||||||||||||||||||||||||||    
T  11164410 tgttatcaacatcaacaa---------cttcagtttccatcatcgaagccacact 11164365  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 11164247 - 11164199
Alignment:
Q  337 ggatttagatttatgtttacctttcaccaagagctacaaaggaatcccc 385  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  11164247 ggatttagatttatgtttacctttcatcaaaagctccaaaggaatcccc 11164199  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 4703676 - 4703725
Alignment:
Q  34 tttctcttcaatcctttgttgccgccactattattattaactaccttctt 83  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  4703676 tttctcttcaaacctttgttgcagccaccattattattaactaccttctt 4703725  T

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