View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_18 (Length: 392)
Name: NF14776_low_18
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 3808885 - 3808535
Alignment:
| Q |
15 |
aatatacacatgtgtgtttggttttacttttgcatgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctccagtgtaat |
114 |
Q |
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| T |
3808885 |
aatatacacatgtgtatttggttttacttttgcacgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctctagtgtaat |
3808786 |
T |
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| Q |
115 |
tgattttgtctccataattaattctaatttgaacttaaaatttggaggttttgcctaaacattgcttatgtttgattgaattccctatgt----tgaatc |
210 |
Q |
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| T |
3808785 |
tgattttgtctccataattaattctaatttgaa-------------ggttttgcctaaacattgcttatgtttgattgaattccctatgtatgttgaatc |
3808699 |
T |
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| Q |
211 |
taaggtgattaacagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcgcttaaaagtgaaatcaactgtaaatttgtggctaaaa |
310 |
Q |
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| T |
3808698 |
taaggtgattaacagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcccttaaaagtgaaatcaactgtaaatttgtggctaaaa |
3808599 |
T |
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| Q |
311 |
atcacgtttggagtaggaaacttcaaatctaaaaaggaaatggaactgaaaagatggggtaatg |
374 |
Q |
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| T |
3808598 |
atcacgtttggagtaggaaacttcaaatctaaaagggaaatggaactgaaaagatggggtaatg |
3808535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 11038100 - 11038216
Alignment:
| Q |
50 |
gagacaaaattgattttagaggtatataattaa--ttgacatatttggaaatgtgctccagtgtaattgattttgtctccataattaattctaatttgaa |
147 |
Q |
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| T |
11038100 |
gagacaaaattgattctagaggtatataattgattttgacatgtttgg--atgttctcgaatggagttgatttttcctccagagttgattctaacttgaa |
11038197 |
T |
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| Q |
148 |
cttaaaatttggaggtttt |
166 |
Q |
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| T |
11038198 |
gctaaaatttggaggtttt |
11038216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 50375638 - 50375588
Alignment:
| Q |
29 |
tgtttggttttacttttgcatgagacaaaattgattttagaggtatataat |
79 |
Q |
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| T |
50375638 |
tgtttgattctacttttggatgagtcaaaattgattttagaggtgtataat |
50375588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 3716800 - 3716755
Alignment:
| Q |
52 |
gacaaaattgattttagaggtatataattaat--tgacatatttgg |
95 |
Q |
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| T |
3716800 |
gacaaaattgattttagaggtatagaattaattctgacatatttgg |
3716755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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