View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_low_2 (Length: 658)

Name: NF14776_low_2
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14776_low_2
NF14776_low_2
[»] chr6 (13 HSPs)
chr6 (1-239)||(24126347-24126586)
chr6 (305-420)||(24126651-24126766)
chr6 (371-420)||(24125972-24126021)
chr6 (367-422)||(7193336-7193391)
chr6 (367-420)||(3543058-3543111)
chr6 (306-359)||(4311122-4311175)
chr6 (367-420)||(33018167-33018220)
chr6 (367-420)||(33480623-33480676)
chr6 (367-415)||(3542819-3542867)
chr6 (367-415)||(22582474-22582522)
chr6 (367-415)||(22587305-22587353)
chr6 (373-421)||(29998176-29998224)
chr6 (367-415)||(33479701-33479749)
[»] chr4 (13 HSPs)
chr4 (1-239)||(47377032-47377271)
chr4 (305-420)||(47376852-47376967)
chr4 (367-420)||(38694702-38694755)
chr4 (367-422)||(9939366-9939421)
chr4 (371-421)||(47377597-47377647)
chr4 (367-422)||(26611278-26611333)
chr4 (367-421)||(11417686-11417740)
chr4 (367-421)||(21166370-21166424)
chr4 (367-421)||(29651327-29651381)
chr4 (367-420)||(11417932-11417985)
chr4 (367-420)||(36865712-36865765)
chr4 (371-420)||(45235959-45236008)
chr4 (371-420)||(45330565-45330614)
[»] chr1 (9 HSPs)
chr1 (139-236)||(41883445-41883543)
chr1 (305-398)||(41882190-41882284)
chr1 (305-406)||(41884162-41884263)
chr1 (340-421)||(51974436-51974517)
chr1 (367-422)||(43737973-43738028)
chr1 (367-421)||(48972440-48972494)
chr1 (367-420)||(16270207-16270260)
chr1 (367-420)||(23440860-23440913)
chr1 (192-236)||(41882913-41882957)
[»] chr8 (7 HSPs)
chr8 (305-391)||(42915743-42915829)
chr8 (340-422)||(41859308-41859390)
chr8 (373-420)||(43924490-43924537)
chr8 (367-425)||(5034893-5034951)
chr8 (374-420)||(12349967-12350013)
chr8 (367-421)||(34992259-34992313)
chr8 (367-420)||(38023624-38023677)
[»] chr2 (10 HSPs)
chr2 (305-402)||(4058949-4059046)
chr2 (367-421)||(37547997-37548051)
chr2 (368-414)||(44154978-44155024)
chr2 (340-421)||(21471016-21471097)
chr2 (371-424)||(30545434-30545487)
chr2 (371-420)||(37546563-37546612)
chr2 (373-421)||(41043329-41043377)
chr2 (367-420)||(14573261-14573314)
chr2 (367-420)||(21471949-21472002)
chr2 (368-420)||(30544727-30544779)
[»] chr7 (13 HSPs)
chr7 (304-406)||(26246310-26246412)
chr7 (340-420)||(668179-668259)
chr7 (367-422)||(37468908-37468963)
chr7 (367-421)||(38071897-38071951)
chr7 (367-421)||(38778853-38778907)
chr7 (362-420)||(46759252-46759310)
chr7 (367-420)||(17145622-17145675)
chr7 (371-420)||(27599211-27599260)
chr7 (371-420)||(27600094-27600143)
chr7 (367-420)||(37469000-37469053)
chr7 (367-420)||(38779558-38779611)
chr7 (367-415)||(7677804-7677852)
chr7 (372-420)||(46756270-46756318)
[»] scaffold0041 (2 HSPs)
scaffold0041 (367-420)||(27221-27274)
scaffold0041 (367-420)||(27570-27623)
[»] chr5 (6 HSPs)
chr5 (367-415)||(33001937-33001985)
chr5 (306-390)||(33685775-33685859)
chr5 (367-421)||(8204119-8204173)
chr5 (367-421)||(33002811-33002865)
chr5 (367-420)||(15184012-15184065)
chr5 (602-646)||(8043594-8043638)
[»] chr3 (5 HSPs)
chr3 (367-415)||(32490190-32490238)
chr3 (367-421)||(36750432-36750486)
chr3 (373-423)||(38337478-38337528)
chr3 (367-415)||(36750050-36750098)
chr3 (368-420)||(38923661-38923713)
[»] scaffold0129 (1 HSPs)
scaffold0129 (372-406)||(43218-43252)
[»] scaffold0311 (1 HSPs)
scaffold0311 (368-421)||(156-209)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-120; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24126347 - 24126586
Alignment:
Q  1 cctacttattttatcacaatccaacttgacattgaccatgtagactaattaaggaataattggataaaagtttaacggccaatgttgaaatcatatataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126347 cctacttattttatcacaatccaacttgacattgaccatgtagactaattaaggaataattggataaaagtttaacggccaatgttgaaatcatatataa 24126446  T
Q  101 ataagtcctttggtgggagagatgaaaatacagcctattttaacattgactatttattcaa-tttaaaattgaggaatggttaaatcttgggttggactg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| |||||||    
T  24126447 ataagtcctttggtgggagagatgaaaatacagcctattttaacattgactatttattcaacattaaaattgaggaatggttaaatcatgggctggactg 24126546  T
Q  200 aaattgtattgcaaaaatttagatctggaatgcaaagttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24126547 aaattgtattgcaaaaatttagatctggaatgcaaagttt 24126586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 305 - 420
Target Start/End: Original strand, 24126651 - 24126766
Alignment:
Q  305 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |    
T  24126651 aaaaatatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaaacaactcccctttcc 24126750  T
Q  405 caaattaaatgccacc 420  Q
    ||||||||||||||||    
T  24126751 caaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 24126021 - 24125972
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  24126021 aactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 7193391 - 7193336
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  7193391 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 7193336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 3543058 - 3543111
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  3543058 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 4311122 - 4311175
Alignment:
Q  306 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaa 359  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| || ||||||    
T  4311122 aaaatatctaatgttaagagtccatgatagtaccgtgttcttcatttgatccaa 4311175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 33018220 - 33018167
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| | ||||||||||| ||||| ||||| |||||||||||| ||||    
T  33018220 gatcaactttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 33480623 - 33480676
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  33480623 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 3542867 - 3542819
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  3542867 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 22582474 - 22582522
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22582474 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 22587305 - 22587353
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22587305 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 29998176 - 29998224
Alignment:
Q  373 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||| ||||||||| ||| ||||  ||||||||||||||||||||||||    
T  29998176 ctttcccatgatggaaaaaaactaaccttttccaaattaaatgccacct 29998224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 33479749 - 33479701
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  33479749 gatcaactttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 47377271 - 47377032
Alignment:
Q  1 cctacttattttatcacaatccaacttgacattgaccatgtagactaattaaggaataattggataaaagtttaacggccaatgttgaaatcatatataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47377271 cctacttattttatcacaatccaacttgacattgaccatgtagactaattaaggaataattggataaaagtttaacggccaatgttgaaatcatatataa 47377172  T
Q  101 ataagtcctttggtgggagagatgaaaatacagcctattttaacattgactatttattcaa-tttaaaattgaggaatggttaaatcttgggttggactg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| |||||||    
T  47377171 ataagtcctttggtgggagagatgaaaatacagcctattttaacattgactatttattcaacattaaaattgaggaatggttaaatcatgggctggactg 47377072  T
Q  200 aaattgtattgcaaaaatttagatctggaatgcaaagttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47377071 aaattgtattgcaaaaatttagatctggaatgcaaagttt 47377032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 305 - 420
Target Start/End: Complemental strand, 47376967 - 47376852
Alignment:
Q  305 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |    
T  47376967 aaaaatatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttcccatgatgggaaacaactcccctttcc 47376868  T
Q  405 caaattaaatgccacc 420  Q
    ||||||||||||||||    
T  47376867 caaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 38694755 - 38694702
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  38694755 gatcaacttttccatgctgggaaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 9939366 - 9939421
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||||||||| ||||||| |||||||||||  ||||||||||| ||||||    
T  9939366 gatcaacttttccatggtgggaaagaactcccctttctcaaattaaatggcacctg 9939421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 47377597 - 47377647
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| |||||    
T  47377597 aactttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 26611278 - 26611333
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  26611278 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatgacacctg 26611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 11417740 - 11417686
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  11417740 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 21166370 - 21166424
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||||||||||| ||||| |||||  ||||||||||| |||||    
T  21166370 gatcaactttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 29651327 - 29651381
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  29651327 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 11417932 - 11417985
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  11417932 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 36865712 - 36865765
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  36865712 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 45235959 - 45236008
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  45235959 aactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 45330614 - 45330565
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||||| ||||||||||||||||||| |||  |||||| |||||    
T  45330614 aacttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 41883445 - 41883543
Alignment:
Q  139 tttaacattgactatttattcaat-ttaaaattgaggaatggttaaatcttgggttggactgaaattgtattgcaaaaatttagatctggaatgcaaag 236  Q
    ||||||||||| |||||||||||  ||||||||||| |||||| ||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||    
T  41883445 tttaacattgattatttattcaacattaaaattgagaaatggtcaaatcttggatttgactgaaattgtattgcaaatatttggatcttgaatgcaaag 41883543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 41882284 - 41882190
Alignment:
Q  305 aaaaatatctagtgtt-aagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccc 398  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| || |||||| |||||  ||||||||| | ||| |||||||| ||||||    
T  41882284 aaaaatatctagtgtttaagagtccatgataataccatgttcttcatttgatccaatagtcagaatcaactttcctatggtgggaaactactccc 41882190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 41884162 - 41884263
Alignment:
Q  305 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttc 404  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||| || ||| || ||| |  ||||||||| | ||| |||||||||| | ||||||||    
T  41884162 aaaaatttctagtgttaagagtccatgataatatcatgttcttcatttgatctaatagttagaatcaactttcctatggtgggaaacaatttcccttttc 41884261  T
Q  405 ca 406  Q
    ||    
T  41884262 ca 41884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 51974517 - 51974436
Alignment:
Q  340 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| |||||| || || || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  51974517 atgttcttcatttaatctaatagacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 51974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 43737973 - 43738028
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  43737973 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacctg 43738028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 48972440 - 48972494
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  48972440 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggcacct 48972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 16270260 - 16270207
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  16270260 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 23440860 - 23440913
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  23440860 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 41882957 - 41882913
Alignment:
Q  192 ttggactgaaattgtattgcaaaaatttagatctggaatgcaaag 236  Q
    |||||||||||||||| |||||| |||| ||| ||||||||||||    
T  41882957 ttggactgaaattgtaatgcaaatatttggatatggaatgcaaag 41882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 42915743 - 42915829
Alignment:
Q  305 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaac 391  Q
    ||||||||||||||||||||||| || |||||||||||||||| | |||||  || |||||| ||||||||| | ||| ||||||||    
T  42915743 aaaaatatctagtgttaagagtctatgataataccatgttctttatttaatttaatagtcaaaatcaactttcctatggtgggaaac 42915829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 41859390 - 41859308
Alignment:
Q  340 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  41859390 atgttcttcatttaatctaacggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 41859308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  373 cttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 5034951 - 5034893
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtca 425  Q
    |||||||||| ||||| ||| ||| ||||| ||||| |||||||||||| |||||||||    
T  5034951 gatcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacctgtca 5034893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 12350013 - 12349967
Alignment:
Q  374 ttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    ||||||||| |||||||||||| |||||| |||||||||| ||||||    
T  12350013 ttttccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 34992259 - 34992313
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  34992259 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 38023677 - 38023624
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||||||||||||| ||| || || ||||| |||||||||||| ||||    
T  38023677 gatcaacttttccatgatggaaaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 402
Target Start/End: Original strand, 4058949 - 4059046
Alignment:
Q  305 aaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttt 402  Q
    |||||||||||||||||| |||| || ||||||||||||||| || || ||| || |||||| ||||||||| | ||| |||||||| | ||||||||    
T  4058949 aaaaatatctagtgttaacagtctatgataataccatgttctccatttgatctaatagtcaaaatcaactttcctatggtgggaaactagtccccttt 4059046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 37548051 - 37547997
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||    
T  37548051 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 44154978 - 44155024
Alignment:
Q  368 atcaacttttccatgatgggaaacaactccccttttccaaattaaat 414  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||    
T  44154978 atcaacttttccatcatgggaaacaacttccctttcccaaattaaat 44155024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 21471097 - 21471016
Alignment:
Q  340 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  21471097 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 21471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 30545434 - 30545487
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtc 424  Q
    |||||| |||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  30545434 aactttcccatcatgggaaacaacttccctttcccaaattaaatggcacctgtc 30545487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 37546563 - 37546612
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  37546563 aactttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 41043329 - 41043377
Alignment:
Q  373 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  41043329 cttttccatgatgggaaaaaactagcctttcccaaattaaatgccacct 41043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 14573314 - 14573261
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  14573314 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 21471949 - 21472002
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  21471949 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 30544779 - 30544727
Alignment:
Q  368 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    ||||||||| |||| ||||||||||||| || ||| |||||||||||| ||||    
T  30544779 atcaactttcccatcatgggaaacaacttccatttcccaaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 26246310 - 26246412
Alignment:
Q  304 aaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactcccctttt 403  Q
    |||||||||||| |||||| |||| || ||||||||||||||| || || ||  || || ||| ||||||||| | ||| |||||||| | |||||||||    
T  26246310 aaaaaatatctattgttaacagtctatgataataccatgttctccatttgatataatagccaaaatcaactttcctatggtgggaaactagtcccctttt 26246409  T
Q  404 cca 406  Q
    |||    
T  26246410 cca 26246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 668259 - 668179
Alignment:
Q  340 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  668259 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 37468963 - 37468908
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 422  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  37468963 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 37468908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 38071951 - 38071897
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||||||||||| ||||| ||||| | |||||||||| |||||    
T  38071951 gatcaactttcccatgatgggaaagaactctcctttcctaaattaaatggcacct 38071897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 38778907 - 38778853
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  38778907 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 38778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 46759252 - 46759310
Alignment:
Q  362 gtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||| | |||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  46759252 gtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 17145675 - 17145622
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  17145675 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 27599260 - 27599211
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27599260 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 27600094 - 27600143
Alignment:
Q  371 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27600094 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 37469000 - 37469053
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  37469000 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 38779558 - 38779611
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  38779558 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 7677804 - 7677852
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  7677804 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 46756318 - 46756270
Alignment:
Q  372 acttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    ||||||||||| ||| |||||||| |||||| |||||||||| ||||||    
T  46756318 acttttccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 27274 - 27221
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||    
T  27274 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 27570 - 27623
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  27570 gatcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 33001985 - 33001937
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  33001985 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 33685859 - 33685775
Alignment:
Q  306 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaa 390  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||| |||||| ||  | ||  |||||||||| |||| |||||||    
T  33685859 aaaatatcttgtgttaagagtccatgataatactatattcttcatttaatctaatggacataatcaacttttacatggtgggaaa 33685775  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 8204173 - 8204119
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  8204173 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 8204119  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 33002811 - 33002865
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  33002811 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 15184012 - 15184065
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  15184012 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 602 - 646
Target Start/End: Original strand, 8043594 - 8043638
Alignment:
Q  602 ttatctttctttcattcttgataaagctaatgaaattaatgatga 646  Q
    ||||||| |||||||||||||||||||||| ||||| || |||||    
T  8043594 ttatcttcctttcattcttgataaagctaaagaaatgaaagatga 8043638  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 32490190 - 32490238
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  32490190 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 36750432 - 36750486
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  36750432 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 36750486  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 38337478 - 38337528
Alignment:
Q  373 cttttccatgatgggaaacaactccccttttccaaattaaatgccacctgt 423  Q
    |||| ||||| |||||||||||| |||||| |||||||||| |||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacctgt 38337528  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 36750098 - 36750050
Alignment:
Q  367 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 415  Q
    |||||||||||||||| ||| ||| ||||| ||||| ||||||||||||    
T  36750098 gatcaacttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 38923661 - 38923713
Alignment:
Q  368 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 420  Q
    ||||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||    
T  38923661 atcaacttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 43218 - 43252
Alignment:
Q  372 acttttccatgatgggaaacaactccccttttcca 406  Q
    ||||| |||||||||||||||||||||||||||||    
T  43218 actttcccatgatgggaaacaactccccttttcca 43252  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 156 - 209
Alignment:
Q  368 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 421  Q
    ||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  156 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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