View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_low_24 (Length: 337)

Name: NF14776_low_24
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14776_low_24
NF14776_low_24
[»] chr5 (11 HSPs)
chr5 (13-322)||(1162348-1162657)
chr5 (117-253)||(1850468-1850604)
chr5 (13-167)||(39880558-39880703)
chr5 (13-275)||(40419467-40419715)
chr5 (54-113)||(1850781-1850840)
chr5 (13-105)||(40412704-40412792)
chr5 (128-321)||(38988459-38988658)
chr5 (130-322)||(40412492-40412691)
chr5 (13-49)||(3300186-3300222)
chr5 (13-49)||(3393079-3393115)
chr5 (277-322)||(39400937-39400982)
[»] chr4 (1 HSPs)
chr4 (152-272)||(25911041-25911161)
[»] chr8 (1 HSPs)
chr8 (163-253)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 1162348 - 1162657
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162348 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 1162447  T
Q  113 gcatagagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgt 212  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162448 gtatagagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgt 1162547  T
Q  213 cgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgcttatcttaaagagattcttcgcggcca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1162548 cgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgtttatcttaaagagattcttcgcggcca 1162647  T
Q  313 ggaactagtt 322  Q
    ||||||||||    
T  1162648 ggaactagtt 1162657  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 1850604 - 1850468
Alignment:
Q  117 agagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgta 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  1850604 agagagattgcgaaggggtttgagacaataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcatc 1850505  T
Q  217 taaatgcaatcagcaaattcagcaatctcataattga 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  1850504 taaatgcaatcagcaaattcagcaatctcataattga 1850468  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 39880703 - 39880558
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 112  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||||||     ||||    
T  39880703 agtgaagagaagcgaaactagccatgtttgaatgcaagagttgtataaa----ccagttttgctgcaaaatctacatccctaaggctttga-----gatt 39880613  T
Q  113 gcatagagagattgagaaggggtttgagacaataattttcaagctcgtgttgtaa 167  Q
      |    ||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  39880612 taaacctgagattgtgaaggggtttaagacaataattttcaagctcatgttgtaa 39880558  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 40419715 - 40419467
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggatt 112  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||||    |||||||||         || ||||||||||||||||||||| ||||    
T  40419715 agtgaaaagaagtaaaactagccatatttgagtgcaagagttatataaa----ccagttttg---------ctacatccctaaggctttgagacacgatt 40419629  T
Q  113 gcat-----aga--gagattgagaaggggtttgagac--aataattttcaagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatc 203  Q
      ||     |||  ||||||| ||| || ||||||||  |||| |||||||||||  | |||||||| ||  ||||||||||||          |||| |    
T  40419628 atatacttaagaatgagattgcgaatggctttgagacaaaatagttttcaagctcaaggtgtaacaaattccgtagcctataat----------aacacc 40419539  T
Q  204 tcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaa 275  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  40419538 tcaaaatgtcgtataattgcaatcagcaaattcagcaatctcataattgatggacaaatgtatcatgagaaa 40419467  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 1850840 - 1850781
Alignment:
Q  54 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850840 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattg 1850781  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 40412792 - 40412704
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgaga 105  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||||||||    
T  40412792 agtgaagagaagcgaaactagccatgtttgaatgcaagagttgtataaa----ccagttttgctgcaaaatctacatccctaaggctttgaga 40412704  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 321
Target Start/End: Complemental strand, 38988658 - 38988459
Alignment:
Q  128 gaaggggtttgagacaataattttcaagctcgtgttgtaa-------caacttgagtagcctataatgatat------aactgaacatctcaaaatgtcg 214  Q
    |||||||||| |||||||||| ||||||||| ||||||||       |||||| | ||||||||||||||||      ||||||||| |||| ||||||     
T  38988658 gaaggggtttaagacaataatgttcaagctcatgttgtaagttgtaacaacttcaatagcctataatgatattgatataactgaacacctcataatgtca 38988559  T
Q  215 tataaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgagaaaaacaagttgcttatc--ttaaagagattcttcgcggcca 312  Q
    ||||| |||||||||||          ||||||||||||  |||||||||||||  ||||||||||||||||||||  ||||||||||||||||  ||||    
T  38988558 tataattgcaatcagcat---------tctcataattgatggacaaatgtatcacaagaaaaacaagttgcttatcttttaaagagattcttcgtagcca 38988468  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 322
Target Start/End: Complemental strand, 40412691 - 40412492
Alignment:
Q  130 aggggtttgagacaataattttcaagctcgtgttgtaa-------caacttgagtagcctataatgatat------aactgaacatctcaaaatgtcgta 216  Q
    |||||||| |||||||||||||||||||| ||||||||       |||||| | ||||||||||||||||      ||||||||| |||| ||| || ||    
T  40412691 aggggtttaagacaataattttcaagctcatgttgtaagttgcaacaacttcaatagcctataatgatattgatataactgaacacctcagaatatcata 40412592  T
Q  217 taaatgcaatcagcaaattcagcaatctcataattgacagacaaatgtatcatgag-aaaaacaagttgcttatc--ttaaagagattcttcgcggccag 313  Q
    ||| || |||||||||         ||||||||||||  |||||||||||||  || ||||||||||||||||||  |||||||||||||| |  |||||    
T  40412591 taattgtaatcagcaa---------tctcataattgatggacaaatgtatcacaagaaaaaacaagttgcttatcttttaaagagattcttagtagccag 40412501  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3300222 - 3300186
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaa 49  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3300222 agtgaaaagaagtaaaactagccatgtttgagtgcaa 3300186  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 3393115 - 3393079
Alignment:
Q  13 agtgaaaagaagtaaaactagccatgtttgattgcaa 49  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3393115 agtgaaaagaagtaaaactagccatgtttgagtgcaa 3393079  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 39400982 - 39400937
Alignment:
Q  277 acaagttgcttatcttaaagagattcttcgcggccaggaactagtt 322  Q
    |||||||| |||||||||| |||||||| || ||||||||||||||    
T  39400982 acaagttggttatcttaaaaagattctttgcagccaggaactagtt 39400937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 25911041 - 25911161
Alignment:
Q  152 caagctcgtgttgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataatt 251  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  25911041 caagctcatggtgtaacaacttcagtagcctataataatataactgaacacctcaaaatatcatataattgcaatcagcaaattcagcaatctcataatt 25911140  T
Q  252 gacagacaaatgtatcatgag 272  Q
    ||  |||||||||||||||||    
T  25911141 gatggacaaatgtatcatgag 25911161  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 34401981 - 34401891
Alignment:
Q  163 tgtaacaacttgagtagcctataatgatataactgaacatctcaaaatgtcgtataaatgcaatcagcaaattcagcaatctcataattga 253  Q
    ||||||||||| ||||||||||||| ||||||||||||  ||||||||||| ||||| || ||||||||| |||| | |||||||||||||    
T  34401981 tgtaacaacttcagtagcctataataatataactgaactcctcaaaatgtcatataattgaaatcagcaatttcacccatctcataattga 34401891  T

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