View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_27 (Length: 316)
Name: NF14776_low_27
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31206399 - 31206676
Alignment:
| Q |
18 |
aagtcatggactctggaagctcctttaacaacaagttgagactctaaggctaaatgaaggtggagttgttcaccttataaataaaacggtttgtaatgtt |
117 |
Q |
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| T |
31206399 |
aagtcatggactctggaagctc-tttaacaacaagttgagactctaaggctagatgaaggtggagttgttcaccttgaaaacaaaacggtttgtaatgtt |
31206497 |
T |
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| Q |
118 |
caagatatgtgttc----cgtatgtcttacgatgtttgccaaccatatgttacttttgcaagatgtgaggtgtgttcttgaacttaacatgatttgttat |
213 |
Q |
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| T |
31206498 |
caagatatgtgttcagtaagtatgtcttacgatgtttgccaaccatgagttacttttgcaagatgtgaggtgtgttcttgaacttaacatgatttgttat |
31206597 |
T |
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| Q |
214 |
caatcaacatgtttgaactaatagttaactttttcaagtataataaaagaggtaaaattctaagaaaaattataaacta |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31206598 |
caatcaacatgtttgaactaatagttaactttttcaagtaaaataaaagaggtaaaattctaagaaaaattataaacta |
31206676 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 2239226 - 2239196
Alignment:
| Q |
169 |
ttgcaagatgtgaggtgtgttcttgaactta |
199 |
Q |
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| T |
2239226 |
ttgcaagatgtgaggtgtgttcttgaactta |
2239196 |
T |
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