View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14776_low_34 (Length: 293)
Name: NF14776_low_34
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 258386 - 258632
Alignment:
| Q |
16 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
258386 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
258480 |
T |
|
| Q |
116 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258481 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
258570 |
T |
|
| Q |
216 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258571 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
258632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 657535 - 657289
Alignment:
| Q |
16 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
657535 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
657441 |
T |
|
| Q |
116 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
657440 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
657351 |
T |
|
| Q |
216 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
657350 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
657289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 843270 - 843024
Alignment:
| Q |
16 |
cacagagcctcccttattgtttaggaagaaacctatatatatgcaagtgacaaacttagtttctttgaagttttagttttactatgatgcttgttgatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
843270 |
cacagagcctcccttattgtttaggaagaaacctatat----gcaagtgacaaacttagtttctttgaagttttagttt-actatgatgcttgttgatga |
843176 |
T |
|
| Q |
116 |
ttaacaatatgcttgctctgattccctgctattccatttgacaaagtatattaaactacatttcgtgttactggaaggccctaacgctctcaaactcgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
843175 |
ttaacaatatgcttgctctgattccctgctattccatttgac----------aaactacatttcgtgttactggaaggccctaacgctctcaaactcggc |
843086 |
T |
|
| Q |
216 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
843085 |
atgtgtagatcctatgatttactcttgaattttgtcaaaggaaataacatgcatgatattct |
843024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University