View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_37 (Length: 270)
Name: NF14776_low_37
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 34274700 - 34274960
Alignment:
| Q |
1 |
atgcactgtcaaataaataacagcagtatgttatgcgtaacaagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaa |
100 |
Q |
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| T |
34274700 |
atgcactgtcaaataaataacagcagtatgttatacgtaacaagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaa |
34274799 |
T |
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| Q |
101 |
aaaggtgaagatggctaagcatgtcattaaggtggagtccgttcctgaggaacaaatcgacattacaagtgcagaagtcgttcctgatgcatctaacgaa |
200 |
Q |
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| T |
34274800 |
aaaggtgaagatggctaagcatgtcattaagttggagtccgttcctgaggaacaaatcgacattacaagtgcagaagtcgttcctgatgcatctaacgaa |
34274899 |
T |
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| Q |
201 |
attgaggaccctgatgcaactgagtattcaagttcgtttgctgataccatctctgctgctg |
261 |
Q |
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| T |
34274900 |
attgaggaccctgatgcaactgagtattcaagttcgtttgctgataccatctctgatgctg |
34274960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 34281707 - 34281750
Alignment:
| Q |
204 |
gaggaccctgatgcaactgagtattcaagttcgtttgctgatac |
247 |
Q |
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| T |
34281707 |
gaggaccctgatgcaactgaatattcgagttcctttgctgatac |
34281750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 20229857 - 20229778
Alignment:
| Q |
41 |
caagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaaaaaggtgaagatggctaagc |
120 |
Q |
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| T |
20229857 |
caagttaattttgaattcattgaatttagttatgaatttagattttgaacaggtaactaaaaaggtgaagatggctaagc |
20229778 |
T |
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