View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_41 (Length: 241)
Name: NF14776_low_41
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 8181143 - 8180920
Alignment:
| Q |
1 |
actgaaatgttaaactgagttgattatattagaagagtaaaatcagtatatactttgtcaccgattgcatcttgtaccaaaattgcatcactggagatgt |
100 |
Q |
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| T |
8181143 |
actgaaatgttaaactgagttgattatattagaagagtaaaatcagtatatactttgtcaccaattgcatcttgtaccaaaattgcatcactggagatgt |
8181044 |
T |
|
| Q |
101 |
gagaaatgatattggcatcctttgcttcattgtcaaagaaacgaatatccttctttagtactgactgcaaatatcttaaccttatccgagccgtttgtct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8181043 |
gagaaatgatattggcatcctttgcttcattgtcaaagaaacgaatatccttctttagtactgactgcaaatatcttaaccttatccaagccgtttgtct |
8180944 |
T |
|
| Q |
201 |
ttcgcctgtttgcgtccagaatgc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
8180943 |
ttcgcctgtttgcgtccagaatgc |
8180920 |
T |
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