View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_42 (Length: 238)
Name: NF14776_low_42
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 2408061 - 2407855
Alignment:
| Q |
16 |
atcatactgtaagttaatgcacataaggtcctgcttattgctaagcacctgaattactgcttgcttaatgtgtgttttttaaagacagtggctgaaactt |
115 |
Q |
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| T |
2408061 |
atcaaactgtaagttaatgcacataaggtcctgcttattgctaagcacctgaattactgcttgcttaatgtgtgttttttaaagacagtggctgaaactt |
2407962 |
T |
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| Q |
116 |
cctcaaaatattgtgtagggaaacattcatagtgacaacaactacaacagcaaagtgcaacttaaattatctgctaaaacacctaacagaaatcctggtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2407961 |
cctcaaaatattgtgtagggaaacattcatagtgacaacaactacaacagcaaagtgcaacttatattatctgctaaaacacctaacagaaatcctggtt |
2407862 |
T |
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| Q |
216 |
ctaaact |
222 |
Q |
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||||||| |
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| T |
2407861 |
ctaaact |
2407855 |
T |
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