View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_5 (Length: 617)
Name: NF14776_low_5
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 4792880 - 4793275
Alignment:
| Q |
18 |
caaaagcccaacttcttttacctgttttgacagatatggacaaaatttgaacaaaaaatatttaggtaaacataataaagttcatgtatcagaaattcag |
117 |
Q |
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| T |
4792880 |
caaaagcccaacttcttttacctgttttgacagatatggacaaaatttgaacaaaaaatatttaggtaaacataataaagttcatgtatcagaaattcag |
4792979 |
T |
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| Q |
118 |
aatatagaannnnnnnnnccactcacaaatatgcagggagcaacaaaagtgtcttaagtcttaacttctaagttgcaactaagataatgtggcattaaaa |
217 |
Q |
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| T |
4792980 |
aatatagaatttttttttccactcacaaatatgcagggagcaacaaaagtgtcttaagtcttaacttctaagttgcaactaagatattgtggcattaaaa |
4793079 |
T |
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| Q |
218 |
ttaaagaaaggatactcactcacctaattctcataccccttttgaattgatcctctcctgcactatcatgcaaattgattcacacggtacaattatttct |
317 |
Q |
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| T |
4793080 |
ttaaagaaagggtactcactcacctaattctcataccccttttgaattgatcctctcctgcactatcatgcaaattgattcacacggtacaattatttct |
4793179 |
T |
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| Q |
318 |
taaaggactatacatgaccttgtcaaattaaattaaaagaactaccaaagaatcctccaataattg----taatattgattcttggtccatcctat |
409 |
Q |
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| T |
4793180 |
taaaggactatacatgaccttttcaaatcaaattaaaagaactaccaaagaatcctccaataattgtaattaatattgattcttggtccatcctat |
4793275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 499 - 600
Target Start/End: Original strand, 4793368 - 4793469
Alignment:
| Q |
499 |
gaagttagtagacataatcataaaatatacaattaaagagatggaagggttgtttgtccactgtctcatcgataaacacttctgttgtgagctaggttgt |
598 |
Q |
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| T |
4793368 |
gaagttagtagacataatcataaaatataaaattaaagagatggaagggttgtttgtccactgtctcaccgataaacacttctgttgtgagctaggttgt |
4793467 |
T |
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| Q |
599 |
tc |
600 |
Q |
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|| |
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| T |
4793468 |
tc |
4793469 |
T |
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