View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_7 (Length: 517)
Name: NF14776_low_7
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 480
Target Start/End: Complemental strand, 39319112 - 39318644
Alignment:
| Q |
7 |
gcagtagaggtacctgcaaacattttgacactcaagtcagttagagagtaaatgattgagaggttttaggatagagtttgtgcatcatacatatgtgagg |
106 |
Q |
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| T |
39319112 |
gcagtagaggtacctgcaaacactttgacactcaagtcagttagagagtaaatgaa-gagaggttttaggatagagtttgtgcatcttacatatgcgagg |
39319014 |
T |
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| Q |
107 |
aaggcttgattttcgagttgttagttgtttgaatgggaaccttacgaagcggtgtgccatcaatgtctatctttgtctattatgtgtcgttaggaagttt |
206 |
Q |
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| T |
39319013 |
aaggcttgattttcgagttgttagttgtttgaatgggaaccttacgaagcggtgtgccatcaatgtctatctttgtctattatgtgtcgttaggacgttt |
39318914 |
T |
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| Q |
207 |
gagagtgaatggtccttggttagtcgttggaggcatttgggaagcaggatggatccaaggttgttgacttggttcgatgattgagtttggcctatgattt |
306 |
Q |
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| T |
39318913 |
gagagtgaacggtccttggttagtcgttggaggcatttgggaagcaggatggatccaaggttgttgacttggttcgatgattgagtttggcctatgattt |
39318814 |
T |
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| Q |
307 |
ttgttcggcctcatgcatggtcgctaatttgagccattgaccagtctaaaacaaaagtgtagtaccaatgaacagcacaaaaattatataattttttgag |
406 |
Q |
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| T |
39318813 |
ttgttcggc----ttcatggtcgctaatttgatccattgaccagtctaaaacaaaagtgtagtaccaatgaacagcacaaaaattatataattttttgag |
39318718 |
T |
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| Q |
407 |
tatatacatgtgaaatgatcttaaacggtgcgaaaagttcctcccaaaaatgtttatttggttctattttctat |
480 |
Q |
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| T |
39318717 |
tatatacatgtgaaatgatcttaaacggtgcgaaaagttcctcccaaaaatgtttatttcgttctattttctat |
39318644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 504
Target Start/End: Complemental strand, 39318616 - 39318587
Alignment:
| Q |
475 |
ttctatcattgattactagaagcagaaagt |
504 |
Q |
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| T |
39318616 |
ttctatcattgattactagaagcagaaagt |
39318587 |
T |
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