View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_low_9 (Length: 506)
Name: NF14776_low_9
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 34289740 - 34289262
Alignment:
| Q |
1 |
tagaaatgatacctaaatttattcatcaagtaaacccaagtaacaaaaatagtaaggtattttccacaactatactatatatagtctttatatataatac |
100 |
Q |
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| T |
34289740 |
tagaaatgatacctaaatttattcatcaagtaaacccaagtaataaaaatagtaaggtattttccacaactatactata----gtctttatatataatac |
34289645 |
T |
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| Q |
101 |
taatagcattatccacaatagttttttgagaagtctcttaccttataatattttctctgtttgcaggaagcaccagtaacacgagaaatgcatgatcata |
200 |
Q |
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| T |
34289644 |
taatagcattatccacaatagtttt--gagaaatctcttaccttataatattttctctgtttgcaggaagcaccagtaacacgagaaatgcatgatcata |
34289547 |
T |
|
| Q |
201 |
taccttcaatttttgaaatgaagatctatgcatatatagtaaaatgtgactttgctggatgtattattttttcttgaagaaaaatgcaatttcactattc |
300 |
Q |
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| T |
34289546 |
taccttcaatttttgaaatgaagatctatgcata----gtaaaatgtgactt-gctggatgtattattttttcttgaagaaaaatgcaatttcactattc |
34289452 |
T |
|
| Q |
301 |
tatcacacatgaaaacgatcaaaattgaaaagtgtgacaagttaaaggccataatagctacaagagaaaagagagaagacatgataaactcttttgctct |
400 |
Q |
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| T |
34289451 |
tatcacacatgaaaacgatcaaaattgaaaagtgtgacaagttaaaggccataatagctacaagagaaaagagagaagacatgataaactcttctgctct |
34289352 |
T |
|
| Q |
401 |
actagaatctcttcacttaagaaatctgccaaatcttgggataaacaacaattcatggtgggtatcaaaattatttgtcactatagatat |
490 |
Q |
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| T |
34289351 |
actagaatctcttcacttaagaaatctgccaaatcttgggataaacaacaattcatggtgggtatcaaaattatttgtcactatagatat |
34289262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 34374938 - 34374988
Alignment:
| Q |
303 |
tcacacatgaaaacgatcaaaattgaaaagtgtgacaagttaaaggccata |
353 |
Q |
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|||||| ||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
34374938 |
tcacacttgaaaaccatcaaaattgaaaagtgtgagaagttaaagaccata |
34374988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 438
Target Start/End: Complemental strand, 15893477 - 15893395
Alignment:
| Q |
356 |
agctacaagagaaaagagagaagacatgataaactcttttgctctactagaatctcttcacttaagaaatctgccaaatcttg |
438 |
Q |
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| T |
15893477 |
agctacaagagaaaagggggaagacatgatacactcttttcctttactagaatctcttcacttaatatatctgccaaatcttg |
15893395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 481
Target Start/End: Complemental strand, 15893367 - 15893318
Alignment:
| Q |
432 |
aatcttgggataaacaacaattcatggtgggtatcaaaattatttgtcac |
481 |
Q |
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| T |
15893367 |
aatcttgggataaacaacaattcatggtgggtatcaaaattatttgtcac |
15893318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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