View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_high_11 (Length: 300)
Name: NF14777_high_11
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 7822728 - 7822472
Alignment:
| Q |
27 |
aataatgataatgatcatcatcaactcgctaccttcactcggatccgaactcgggacgactcagttgtagccatctccttagcatccccggagcattgta |
126 |
Q |
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| T |
7822728 |
aataataataatgatcctcatcaactcgctaccttcactcggatccgaactcgggacgactcagttgtagccatctccttagcatccccggagcattgta |
7822629 |
T |
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| Q |
127 |
aaattgttttcnnnnnnnnagtgcaagatatattaatgcacataaattaaatacaatacaactgagatggcctnnnnnnntctcatctccatatggaaaa |
226 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7822628 |
aaattgttttcttttttttagtgcaagatataataatgcacataaattaaatacaatacaactgagatggcctaaaaaaatctcatctccatatggaaaa |
7822529 |
T |
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| Q |
227 |
aaggaaaattggggtaacaatgtgaaacccacaatttaccttgtataaataaatcct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7822528 |
aaggaaaattggggtaacaatgtgaaacccacaatttaccttgtataaataaatcct |
7822472 |
T |
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