View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_high_2 (Length: 641)
Name: NF14777_high_2
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 13 - 623
Target Start/End: Complemental strand, 24961341 - 24960730
Alignment:
| Q |
13 |
catcaacttgttagtcactggtacgaaagaataaaccgtcttggctttcgattcgatactagacgtattctaatgatatatctttccaagtcnnnnnnn- |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24961341 |
catcaacttgttagtcactggtacgaaagaataaaccgtcttggctttcgattcgatactagacgtattctaatgatatatctttccaagtcaaaaaaaa |
24961242 |
T |
|
| Q |
112 |
taaaatcatgttcttctaatccttaattgattttcacttttgttcaggttgagaactcattgtgccacagagccttacatcatagcaacaaacagacaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24961241 |
taaaatcatgttcttctaatccttaattgattttcacttttgttcaggttgagaactcattgtgccacagagccttacatcatagcaacaaacagacaac |
24961142 |
T |
|
| Q |
212 |
taagtgcaatgcatccaatctacaaactattacttccacattttcgatacacaatggaaatcaatgcacttgcacgcgaagcacttataaatgcagatgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24961141 |
taagtgcaatgcatccaatctacaaactattacttccacattttcgatacacaatggaaatcaatgcacttgcacgcgaagcacttataaatgcagatgg |
24961042 |
T |
|
| Q |
312 |
aataattgagagtagtttcactcctaaacaactctctctcttggtaagttcaatagcctatgataagcattggcaatttgacttgcaagcccttccaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24961041 |
aataattgagagtagtttcactcctaaacaactctctctcttggtaagttcaatagcctatgataagcattggcaatttgacttgcaagcccttccaaat |
24960942 |
T |
|
| Q |
412 |
gacctcatccatagaggactagcagaaaaagatccaaatgccccacatggcctaaaactagcaatagaagattacccttatgcaaatgatggtcttgttc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24960941 |
gacctcatccatagaggactagcagaaaaagatccaaatgccccacatggcctaaaactagcaatagaagattacccttatgcaaatgatggtcttgttc |
24960842 |
T |
|
| Q |
512 |
tttgggatactatcaaatcttgggtcactgattatgttaaccattactacaacaatgagtcgagaaatgttgagtcggataaagaattacaagcatggtg |
611 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24960841 |
tttgggatacgatcaaatcttgggtcactgattatgttaaccattactacaacaatgagtcgagaaatgttgagtcggataaagaattacaagcatggtg |
24960742 |
T |
|
| Q |
612 |
ggatgagattat |
623 |
Q |
| |
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|||||||||||| |
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| T |
24960741 |
ggatgagattat |
24960730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 35724085 - 35724128
Alignment:
| Q |
370 |
tatgataagcattggcaatttgacttgcaagcccttccaaatga |
413 |
Q |
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| T |
35724085 |
tatgataagctttggcaatttgatttgcaagcacttccaaatga |
35724128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 560
Target Start/End: Original strand, 35708511 - 35708615
Alignment:
| Q |
456 |
acatggcctaaaactagcaatagaagattacccttatgcaaatgatggtcttgttctttgggatactatcaaatcttgggtcactgattatgttaaccat |
555 |
Q |
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|||||| ||||| |||||||| ||||| ||||||| ||| |||||||||||| | | |||||| | |||||| ||||| || |||||||| || ||| |
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| T |
35708511 |
acatggactaaagctagcaattgaagactacccttttgccaatgatggtcttctaatatgggatgcaatcaaacaatgggtgacagattatgtcaatcat |
35708610 |
T |
|
| Q |
556 |
tacta |
560 |
Q |
| |
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||||| |
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|
| T |
35708611 |
tacta |
35708615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 560
Target Start/End: Complemental strand, 35726313 - 35726209
Alignment:
| Q |
456 |
acatggcctaaaactagcaatagaagattacccttatgcaaatgatggtcttgttctttgggatactatcaaatcttgggtcactgattatgttaaccat |
555 |
Q |
| |
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|||||| ||||| |||||||| ||||| ||||||| ||| |||||||||||| | | |||||| | |||||| ||||| || |||||||| || ||| |
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| T |
35726313 |
acatggactaaagctagcaattgaagactacccttttgccaatgatggtcttctcatatgggatgcaatcaaacaatgggtgacagattatgtcaatcat |
35726214 |
T |
|
| Q |
556 |
tacta |
560 |
Q |
| |
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||||| |
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|
| T |
35726213 |
tacta |
35726209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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