View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_high_20 (Length: 240)
Name: NF14777_high_20
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7619630 - 7619850
Alignment:
| Q |
1 |
tacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgccctcctttgggatctttacacagcagc |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
7619630 |
tacaacaagtaaaagtgcatatattcacacaaaagtttgaaacacacaaaaactgaactaacattacaccttccctcctttgggatctttacacaacagc |
7619729 |
T |
|
| Q |
101 |
acacgacaaatcccatttattcacattattataactaagcaagaaattgaagcgagggaccaactagtaagaaaagaaaaattcacaaacacaaacttaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7619730 |
acacgacaaatcccatttattcacattattataactaagcaagaaattgaagcgagggaccaactagtaagaaaagaaaaattcacaaacacaaacttaa |
7619829 |
T |
|
| Q |
201 |
aaatcagaaacaagacgagta |
221 |
Q |
| |
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||||| |||||||||||||| |
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| T |
7619830 |
taatcaaaaacaagacgagta |
7619850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7664264 - 7664042
Alignment:
| Q |
1 |
tacatcaagtaaaagtgcatatattcacacaaaagtttgaaacacacaagacctgaactaacattacacctgccctcctttgggatctttacacagcagc |
100 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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|
| T |
7664264 |
tacaacaagtaaaattgtatatattcacacaaaagtttgaaacacacaagatctgaactaacattacaccttccctcatttgagatctttacacagcagc |
7664165 |
T |
|
| Q |
101 |
acacgacaaatcccatttattcacattattataactaagcaagaaattgaagcgagggaccaactagtaagaaaaga--aaaattcacaaacacaaactt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7664164 |
acacgacaaatcccatttattcacattattataactaggcaagaaattgaagcgagggaccaactagtaagaaaagaaaaaaattcacaaacacaaactt |
7664065 |
T |
|
| Q |
199 |
aaaaatcagaaacaagacgagta |
221 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7664064 |
aaaaatcagaaacaagacgagta |
7664042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 7669799 - 7669748
Alignment:
| Q |
161 |
caactagtaagaaaagaaaaattcacaaacacaaacttaaaaatcagaaaca |
212 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7669799 |
caactagaaagaaaagaaaaactcacaaacacaaacttaaaaatcagaaaca |
7669748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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