View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_high_3 (Length: 619)
Name: NF14777_high_3
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 423 - 603
Target Start/End: Complemental strand, 25125605 - 25125425
Alignment:
| Q |
423 |
aaaaacattaaaagactaacgtccaataccccgggaacaaaaccagcaccaatcccttgaatcttgtgtggtcgtagacgtttgtcatggcaatttgcac |
522 |
Q |
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| T |
25125605 |
aaaaacattaaaagactaacgtccaataccccggtaacaaaaccagcaccaatcccttgaatcttgtgtggtcgtagacgtttgtcatggcaatttgcac |
25125506 |
T |
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| Q |
523 |
atcagcaacagcttcaaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactagccaagctttcaactg |
603 |
Q |
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| T |
25125505 |
atcagcaacagcttcaaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactagccaggctttcaactg |
25125425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 434 - 598
Target Start/End: Original strand, 46936676 - 46936840
Alignment:
| Q |
434 |
aagactaacgtccaataccccgggaacaaaaccagcaccaatcccttgaatcttgtgtggtcgtagacgtttgtcatggcaatttgcacatcagcaacag |
533 |
Q |
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| T |
46936676 |
aagactaacgtccaataccccgggaacaaagccagcaccaatcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacag |
46936775 |
T |
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| Q |
534 |
cttcaaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactagccaagctttc |
598 |
Q |
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| T |
46936776 |
cttcgaaagtaagttcttatttcaactctaaggaacaaaacagtgttataactaaccaggctttc |
46936840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 46935925 - 46936092
Alignment:
| Q |
12 |
cagcacagaggataggtacctctaaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaatcc-ttttttccctgta |
110 |
Q |
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| T |
46935925 |
cagcacagaggataggtacctctcaccaaagctagggaaaacaacctgcaccatatcaaaatgaaaattgtcaatgatgtaaacccttttttttcctata |
46936024 |
T |
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| Q |
111 |
acataccaactgtgccagatattcaaaatatttttatcaaaatttgtatgaatacaatagacttacaa |
178 |
Q |
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| T |
46936025 |
acataccaactgtgccagatattcaaaatatttttatcaaaatttttatggattcaatcaacttacaa |
46936092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 46936154 - 46936206
Alignment:
| Q |
196 |
tccagatgatattccaacctaaaacaatattcatagtaaaggctcaacaaatt |
248 |
Q |
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| T |
46936154 |
tccagatgatattccaacctaaaacaatattcagaatagaggctcaacaaatt |
46936206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 865224 - 865163
Alignment:
| Q |
13 |
agcacagaggataggtacctctaaccaaagctagggaaaacaacctgcaccatatcaaaatg |
74 |
Q |
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| T |
865224 |
agcacagaggacaggtacctctcgccaaagcttggaaaaacgacctgcaccatgtcaaaatg |
865163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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