View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14777_high_4 (Length: 459)
Name: NF14777_high_4
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 47477495 - 47477857
Alignment:
| Q |
23 |
gctcaaattggcataa----caattgcggtattaaatttagaacataaaagaaattcttggcannnnnnnnaatgataaatgttactaattagttagttg |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
47477495 |
gctcaaattggcataagtttcaattgcggtattaaatttagaacataaaagaaattcttggcattttttttaatgataaatgttactagttagttagttg |
47477594 |
T |
|
| Q |
119 |
tgagattactatttactcgtctgtccggatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477595 |
tgagattactatttactcgtctgtccagatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaac |
47477694 |
T |
|
| Q |
219 |
caaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaaatgccaatttct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477695 |
caaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaaatgccaatttct |
47477794 |
T |
|
| Q |
319 |
tcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47477795 |
tcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaactttgaaacc |
47477857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 362
Target Start/End: Original strand, 47486857 - 47487012
Alignment:
| Q |
207 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaa |
306 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || || |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
47486857 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
47486956 |
T |
|
| Q |
307 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
362 |
Q |
| |
|
|| ||| || ||||||||| ||||| |||| |||||| ||| |||||||||| |
|
|
| T |
47486957 |
ataccatcttgctcaggaagaagatcactgtaggctccaccgagtcccatacaccc |
47487012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 381
Target Start/End: Original strand, 47474260 - 47474365
Alignment:
| Q |
276 |
gcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaacttt |
375 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||| || ||||||||||||||||||||| ||||| |||| |||||||||| ||||| || ||| |
|
|
| T |
47474260 |
gcctttactgaaagcatagttaattacggaaataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaatttt |
47474359 |
T |
|
| Q |
376 |
gaaacc |
381 |
Q |
| |
|
|||||| |
|
|
| T |
47474360 |
gaaacc |
47474365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 2097181 - 2097125
Alignment:
| Q |
108 |
ttagttagttgtgagattactatttactcgtctgtccggatttaaacccaggacctc |
164 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
2097181 |
ttagttagttgttagattaatatttactcccttgtccgggtttgaacccaggacctc |
2097125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University