View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_low_11 (Length: 320)
Name: NF14777_low_11
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 14761413 - 14761127
Alignment:
| Q |
18 |
aagcgggcaatccttcttatgcttgtgggtggtgtccacaaacttactcatgaaggcatcaacctcagaggggacatcaatgtctgtattgtaggagatc |
117 |
Q |
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| T |
14761413 |
aagcgagcaatccttcttatgcttgtgggtggtgtccacaaacttattcatgaaggcatcaacctcggaggggacatcaatgtctgtattgtaggagatc |
14761314 |
T |
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| Q |
118 |
ccagctgtgcaaaatctcagtttctcaagtacttccctttttctttttgtttggttacttgatactggttggtctatccaatttgaatcgcatattcatg |
217 |
Q |
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| T |
14761313 |
ccagctgtgcaaaatctcagtttctcaagtacttccctttttctttttgtttggttacttgagactggttagtctatccaatttgaatcgcatattcatg |
14761214 |
T |
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| Q |
218 |
cttgtttaccgtttcaggtatacttcaagcatcattccaagatctgtgtatacatctgggaaatcatcatctgctgctggcttgact |
304 |
Q |
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| T |
14761213 |
cttgtttaccatttcaggtatacttcaagcatcgttccaagatctgtgtatacatctgggaaatcatcatctgctgctggcttgact |
14761127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 37648246 - 37647967
Alignment:
| Q |
18 |
aagcgggcaatccttcttatgcttgtgggtggtgtccacaaacttactcatgaaggcatcaacctcagaggggacatcaatgtctgtattgtaggagatc |
117 |
Q |
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||||| |||||||||||||||||| || |||| || |||||| ||||||||||||||||| ||| ||||||||||| ||||| |||||||| || |||| |
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| T |
37648246 |
aagcgagcaatccttcttatgcttatgagtggggttcacaaatctactcatgaaggcatcagccttagaggggacataaatgtttgtattgttggtgatc |
37648147 |
T |
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| Q |
118 |
ccagctgtgcaaaatctcagtttctcaagtacttccctttttctttttgtttggttac-ttgatactggttggtctatccaatttgaatcgcatattcat |
216 |
Q |
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| T |
37648146 |
ctagctgtgcaaagtctcaatttcttaagtactaccctttctctttttctttgattactttcatgctggtt----tgtgcgaattgaatgg----atcat |
37648055 |
T |
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| Q |
217 |
gcttgtttaccgtttcaggtatacttcaagcatcattccaagatctgtgtatacatctgggaaatcatcatctgctgctggcttgact |
304 |
Q |
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| T |
37648054 |
gtatggttatcatttcaggtatacttcaagcattgttccaagatctgtgtatacatctggaaagtcatcatctgctgctgggttgact |
37647967 |
T |
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