View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_low_17 (Length: 266)
Name: NF14777_low_17
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 32679627 - 32679878
Alignment:
| Q |
15 |
caaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttat |
114 |
Q |
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| T |
32679627 |
caaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttat |
32679726 |
T |
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| Q |
115 |
ggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagatttgca |
214 |
Q |
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| T |
32679727 |
ggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagatttgca |
32679826 |
T |
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| Q |
215 |
aggaagaagtagggaaagagtttaaacttgaggatgacattgatgaagttgc |
266 |
Q |
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| T |
32679827 |
aggaagaagcagggaaagagtttaaacttgaggatgatattgatgaagttgc |
32679878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 32695714 - 32695968
Alignment:
| Q |
27 |
ttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttatgga--------- |
117 |
Q |
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| T |
32695714 |
ttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatggttatggttatggagat |
32695813 |
T |
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| Q |
118 |
------gatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagattt |
211 |
Q |
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| T |
32695814 |
gatgatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggattggattttgctgggtcagtgattgataaggtgaagaatt |
32695913 |
T |
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| Q |
212 |
gcaaggaagaagtagggaaagagtttaaacttgaggatgacattgatgaagttgc |
266 |
Q |
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| T |
32695914 |
gtaaggaagaagcagggaaagaatttaaacttgaggatgatattgatgaagttgc |
32695968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 32686771 - 32686868
Alignment:
| Q |
169 |
ggattggattttgatggctcagtgattgataaggtgaagatttgcaaggaagaagtagggaaagagtttaaacttgaggatgacattgatgaagttgc |
266 |
Q |
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| T |
32686771 |
ggattggattttgacggatcggtgattgataaggtgaagaattgtaaggaagaagcagggaaagaatttaaacttgaggatgatattgatgaagttgc |
32686868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 32686659 - 32686713
Alignment:
| Q |
21 |
tcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaa |
75 |
Q |
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| T |
32686659 |
tcacacttatgaggcgttgcgaaatccaagtgaaacacaagttgtggatgaacaa |
32686713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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