View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_low_21 (Length: 241)
Name: NF14777_low_21
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8348392 - 8348168
Alignment:
| Q |
1 |
gcaagatttgaatagctaaaattaactaataattacttgcatctcttgtattactatccctcttttttaccatgctttttcgattcagtgttgtattacc |
100 |
Q |
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| T |
8348392 |
gcaagatttgaatagctaaaattaactaataattacttgcatctcttgtattactatccctctttttgaccatgctttttcgattcagtgttgtattacc |
8348293 |
T |
|
| Q |
101 |
cctttttgaattgatgaagatgactttgttcttgaagatgaggaaaagaaaatcaatcgtgtttataaagatccaaaacaaacaaacataatcaaactca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348292 |
cctttttgaattgatgaagatgactttgttcttgaagatgaggaaaagaaaatcaatcgtgtttataaagatccaaaacaaacaaacataatcaaactca |
8348193 |
T |
|
| Q |
201 |
gaaattgcatcaagcaattattaac |
225 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
8348192 |
gaaactgcatcaagcaattattaac |
8348168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 8348457 - 8348424
Alignment:
| Q |
5 |
gatttgaatagctaaaattaactaataattactt |
38 |
Q |
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|
| T |
8348457 |
gatttgaatagttaaaattaactaataattactt |
8348424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 33045342 - 33045268
Alignment:
| Q |
76 |
tttttcgattcagtgttgtattaccccttt-ttgaattgatgaagatgactttgttcttgaagatgaggaaaaga |
149 |
Q |
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| T |
33045342 |
tttttcgattcagtgtgctattgcccccttcttgaattgatgaaaatgactttgttcttggagattaggaaaaga |
33045268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 24162710 - 24162677
Alignment:
| Q |
159 |
gtgtttataaagatccaaaacaaacaaacataat |
192 |
Q |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
24162710 |
gtgtttatatagatccaaaacaaacaaacataat |
24162677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 24163347 - 24163380
Alignment:
| Q |
159 |
gtgtttataaagatccaaaacaaacaaacataat |
192 |
Q |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
24163347 |
gtgtttatatagatccaaaacaaacaaacataat |
24163380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 55201599 - 55201632
Alignment:
| Q |
159 |
gtgtttataaagatccaaaacaaacaaacataat |
192 |
Q |
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||||||||| |||||||||||||||||||||||| |
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|
| T |
55201599 |
gtgtttatatagatccaaaacaaacaaacataat |
55201632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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