View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14777_low_5 (Length: 414)

Name: NF14777_low_5
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14777_low_5
NF14777_low_5
[»] chr7 (6 HSPs)
chr7 (19-411)||(33815570-33815962)
chr7 (234-290)||(45429314-45429370)
chr7 (235-297)||(28243153-28243215)
chr7 (235-292)||(8770282-8770339)
chr7 (238-295)||(21222867-21222924)
chr7 (243-295)||(3239994-3240046)
[»] chr4 (6 HSPs)
chr4 (235-299)||(33129788-33129852)
chr4 (243-287)||(1820216-1820260)
chr4 (246-292)||(55882948-55882994)
chr4 (249-298)||(2742184-2742233)
chr4 (235-292)||(31053041-31053098)
chr4 (235-295)||(17517375-17517435)
[»] chr5 (4 HSPs)
chr5 (235-292)||(14717337-14717394)
chr5 (234-295)||(19117275-19117336)
chr5 (235-292)||(32892008-32892065)
chr5 (246-292)||(41579268-41579314)
[»] chr2 (3 HSPs)
chr2 (240-297)||(40288177-40288234)
chr2 (235-295)||(1465738-1465798)
chr2 (235-287)||(34820089-34820141)
[»] chr1 (7 HSPs)
chr1 (238-295)||(47210106-47210163)
chr1 (298-414)||(42483627-42483743)
chr1 (220-295)||(42523273-42523348)
chr1 (238-292)||(22336422-22336476)
chr1 (235-292)||(41970594-41970651)
chr1 (235-295)||(51587375-51587435)
chr1 (302-414)||(42401087-42401199)
[»] chr8 (4 HSPs)
chr8 (216-290)||(40957125-40957199)
chr8 (246-289)||(25487385-25487428)
chr8 (241-295)||(30075763-30075817)
chr8 (238-295)||(10172473-10172530)
[»] chr6 (6 HSPs)
chr6 (238-292)||(8514152-8514206)
chr6 (299-370)||(33099518-33099589)
chr6 (234-295)||(10153212-10153273)
chr6 (196-292)||(2428030-2428124)
chr6 (241-297)||(29071995-29072051)
chr6 (241-297)||(29104568-29104624)
[»] chr3 (1 HSPs)
chr3 (299-369)||(24744340-24744410)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 33815570 - 33815962
Alignment:
Q  19 ccacataccatcatacatcttcaaatcaattgtttctattctaaatattgtgttgtcacatcttaatcattgttcttcattttcttttcaatccttatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33815570 ccacataccatcatacatcttcaaatcaattgtttctattctaaatattgtgttgtcacatcttaatcattgttctttattttcttttcaatccttatgt 33815669  T
Q  119 ctactgatttgaaaattaattcacacacatatgcacatatgtgtaggtacaatcattttaaaatgtatttaacaatttgttgttacatcaatcaattaat 218  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||| |||    
T  33815670 ctactaatttgaaaattaattcacacacatgtgcacatatgtgtaggtacaatcattttaaaatgtattcaacgatttgttgtcacatcaataaatgaat 33815769  T
Q  219 atgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatacttagagcatgcataatggaa 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  33815770 atgaaaatcacatagattttcgtattcattaattgatgtgacaatacattatttgatgcatgtgtaaaataattgtatatttagagcatccataatggaa 33815869  T
Q  319 accctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatcaaataagcactcaatcact 411  Q
    |||||||||||||||||||||||| ||||||||||||| || |||||||||||||       |||||||||||| ||||| ||||||||||||    
T  33815870 accctaaatttagagttcttaaactggtctcacgtgaacacgtcactctttaataatattttaataacagtatctaataaacactcaatcact 33815962  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 45429314 - 45429370
Alignment:
Q  234 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 290  Q
    |||||||||||||||||||||  || ||| |||| |||||||| |||||||||||||    
T  45429314 attttcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 28243215 - 28243153
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 297  Q
    ||||||||||||||||||||| |||||| | || ||| ||||  ||| |||||||||||||||    
T  28243215 ttttcatattcattaattgatatgacaacacatcattggatgcgtgtttaaaataattgtata 28243153  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 8770282 - 8770339
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||| |||||||||||||||||   ||||||  || ||||||||||||||||    
T  8770282 ttttcatatttattaattgatgtgacaacttattattgaatatatgtgtaaaataatt 8770339  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 21222867 - 21222924
Alignment:
Q  238 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||||||||||||||||| ||| | || ||| ||| |||||||||||| ||||||    
T  21222867 tcatattcattaattgatgtgtcaacatatcattagatttatgtgtaaaatgattgta 21222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 3239994 - 3240046
Alignment:
Q  243 ttcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||| |||| ||||||||| ||||||  || |||||||||||||||||||    
T  3239994 ttcattatttgacgtgacaatacattattgaatatatgtgtaaaataattgta 3240046  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 33129852 - 33129788
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatact 299  Q
    ||||||||||| ||||||||  | ||||||||| ||||||||| |||||||||||||||||||||    
T  33129852 ttttcatattcgttaattgactttacaataaatcatttgatgtgtgtgtaaaataattgtatact 33129788  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 1820216 - 1820260
Alignment:
Q  243 ttcattaattgatgtgacaataaattatttgatgtatgtgtaaaa 287  Q
    |||||||||||||| ||||||| || |||||||||||||||||||    
T  1820216 ttcattaattgatgcgacaatacatcatttgatgtatgtgtaaaa 1820260  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 55882994 - 55882948
Alignment:
Q  246 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  55882994 attaattgatgtgtcaatatattatttaatgtatatgtaaaataatt 55882948  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 2742233 - 2742184
Alignment:
Q  249 aattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatac 298  Q
    |||||| ||||||| | |||||| ||||||||| ||||||||||||||||    
T  2742233 aattgacgtgacaacatattattggatgtatgtttaaaataattgtatac 2742184  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 31053041 - 31053098
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||||||||||||| | ||||| | || ||| |||| |||||||||||||||    
T  31053041 ttttcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 17517435 - 17517375
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    |||||||||| ||||||||||||  ||| | || |||||||| ||||||||||| ||||||    
T  17517435 ttttcatatttattaattgatgtagcaacacatcatttgatgaatgtgtaaaatgattgta 17517375  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 14717337 - 14717394
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||||||||||||||||||||| | || ||| |||| |||||||||||||||    
T  14717337 ttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 19117275 - 19117336
Alignment:
Q  234 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    |||||||| |||||||||| ||||||||| | |||||| |||| ||||||||||||||||||    
T  19117275 attttcatgttcattaattaatgtgacaacacattattggatgcatgtgtaaaataattgta 19117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 32892065 - 32892008
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||||||||||| ||  |||||||||||||| |||| |||||||||||||||    
T  32892065 ttttcatattcattaattaatacgacaataaattattggatgcatgtgtaaaataatt 32892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 41579314 - 41579268
Alignment:
Q  246 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||||||| || | |||||| ||||||||||||||||||||    
T  41579314 attaattgatgtgaaaacacattattggatgtatgtgtaaaataatt 41579268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 40288177 - 40288234
Alignment:
Q  240 atattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 297  Q
    ||||| ||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  40288177 atatttattaattgacgtgacaatatattattaaatgtatgtgtaaaataattgtata 40288234  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 1465798 - 1465738
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    |||||||||| ||||||||| ||||||| | || ||| |||| ||||||||||||| ||||    
T  1465798 ttttcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataactgta 1465738  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 34820141 - 34820089
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaa 287  Q
    |||||||||||||||||||| ||||||| |  | ||| |||||||||||||||    
T  34820141 ttttcatattcattaattgacgtgacaacatttgattagatgtatgtgtaaaa 34820089  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 47210106 - 47210163
Alignment:
Q  238 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||    
T  47210106 tcatattcattaatttatgtgacaacatattattagatgtatgtgtaaaatatttgta 47210163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 414
Target Start/End: Original strand, 42483627 - 42483743
Alignment:
Q  298 cttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatcaaata 397  Q
    |||||||||| ||||||||| |||||| |||| ||| |||||| ||| | ||| ||  |||||||||| ||| |||       |||||||||||| ||||    
T  42483627 cttagagcatccataatggagaccctatattttgaggtcttaaccggatttcatgtttatacatcactattttataattttttaataacagtatctaata 42483726  T
Q  398 agcactcaatcactcca 414  Q
    |||||||||||| ||||    
T  42483727 agcactcaatcattcca 42483743  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 42523348 - 42523273
Alignment:
Q  220 tgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    |||||| |||||| ||| ||||||||||||||||| |||||||||||| ||| |||| ||   |||||||||||||    
T  42523348 tgaaaaacacatacattatcatattcattaattgacgtgacaataaatcattagatgcatacataaaataattgta 42523273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 22336476 - 22336422
Alignment:
Q  238 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||||||||||||||||| |  ||| ||||||||||| |||||||||||||||    
T  22336476 tcatattcattaattgatgtaatcatacattatttgatgcatgtgtaaaataatt 22336422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 41970594 - 41970651
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||| ||||||||||||||||||| ||| | |||||||||| ||||| ||||||||||    
T  41970594 tttttatattcattaattgatgtggcaacatattatttgatatatgtataaaataatt 41970651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 51587435 - 51587375
Alignment:
Q  235 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    |||||||||||||||||||| ||  ||| | ||| ||||||| ||||||||||||||||||    
T  51587435 ttttcatattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaataattgta 51587375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 42401199 - 42401087
Alignment:
Q  302 gagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatcaaataagca 401  Q
    |||||| || |||||| || || ||||| |||||||||||||| || || ||| | |||||||||||| |||       |||||||||| | ||||||||    
T  42401199 gagcatccacaatggagactctcaatttggagttcttaaacggatcccatgtgtacacatcactcttttataattttttaataacagtacctaataagca 42401100  T
Q  402 ctcaatcactcca 414  Q
    |||| ||||||||    
T  42401099 ctcagtcactcca 42401087  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 40957199 - 40957125
Alignment:
Q  216 aatatgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 290  Q
    ||||||| ||||||||  ||| ||||||||||||||| | |||||||   |||||| ||||||||||||||||||    
T  40957199 aatatgacaatcacatgaattgtcatattcattaattaacgtgacaacttattattagatgtatgtgtaaaataa 40957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 25487428 - 25487385
Alignment:
Q  246 attaattgatgtgacaataaattatttgatgtatgtgtaaaata 289  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||    
T  25487428 attaattgatgtgacaatacattattgaatgtatgtgtaaaata 25487385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 30075817 - 30075763
Alignment:
Q  241 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||||||||||||||||||||  |||||  ||| || |||||||||||||||    
T  30075817 tattcattaattgatgtgacaatattttattaaatgcatatgtaaaataattgta 30075763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 10172473 - 10172530
Alignment:
Q  238 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||||| ||||||| |||||||   || |||||||| ||||||||||||||||||    
T  10172473 tcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataattgta 10172530  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 8514152 - 8514206
Alignment:
Q  238 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    ||||||| ||||||||||||||||||| || |||  |||||||||||||||||||    
T  8514152 tcatatttattaattgatgtgacaatacatcattgcatgtatgtgtaaaataatt 8514206  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 33099518 - 33099589
Alignment:
Q  299 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttta 370  Q
    ||||||||| || |||||| ||||| ||||| ||| ||||||||||||||||  || |||| ||||||||||    
T  33099518 ttagagcatccacaatggagaccctcaattttgaggtcttaaacgggtctcatatgtatacgtcactcttta 33099589  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 10153212 - 10153273
Alignment:
Q  234 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 295  Q
    ||||||| ||| ||||||||| ||||||| | ||||||  ||| ||||||||||||||||||    
T  10153212 attttcagatttattaattgacgtgacaacacattattgaatgcatgtgtaaaataattgta 10153273  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 2428124 - 2428030
Alignment:
Q  196 tgttgttacatcaatcaattaatatgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 292  Q
    |||||| || ||||| ||| |||||||||| ||| || ||| |||||||||||||||||||||| || | || ||  |||| |||||||||||||||    
T  2428124 tgttgtgacttcaattaatgaatatgaaaa-cactta-attgtcatattcattaattgatgtgataacacatcataagatgcatgtgtaaaataatt 2428030  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 29071995 - 29072051
Alignment:
Q  241 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 297  Q
    ||||||||||||| |||||||| | || |||  |||||||| |||||||||||||||    
T  29071995 tattcattaattggtgtgacaacacataattgaatgtatgtataaaataattgtata 29072051  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 29104568 - 29104624
Alignment:
Q  241 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 297  Q
    ||||||||||||| |||||||| | || |||  |||||||| |||||||||||||||    
T  29104568 tattcattaattggtgtgacaacacataattgaatgtatgtataaaataattgtata 29104624  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 24744340 - 24744410
Alignment:
Q  299 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttt 369  Q
    ||||||||| || |||||| | ||| ||||| |||||||||||  ||||||||||| | ||||||||||||    
T  24744340 ttagagcatccacaatggagatcctgaatttggagttcttaaataggtctcacgtgtacacatcactcttt 24744410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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