View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_low_6 (Length: 361)
Name: NF14777_low_6
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 43063552 - 43063886
Alignment:
| Q |
12 |
gaagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatc |
111 |
Q |
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| T |
43063552 |
gaagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatc |
43063651 |
T |
|
| Q |
112 |
gtacatcttgtttgacagagttcatttctttaagaagacctgaaaactgaaaatggctgcctttggtaaatcgttctttgagattatcccagtgttttgg |
211 |
Q |
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| T |
43063652 |
gtacatcttgtttgaaagagttcatttctttaagaagacctgaaaactgaaaatggttgcctttggtaaatcgttctttgagattatcccagtgttttgg |
43063751 |
T |
|
| Q |
212 |
cattgtcgatttagtcaaccctagaagcaatttgaggtggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaactt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43063752 |
cattgtcgatttagtcaaccctagaagcaatttgagatggaagacagcgattaatccaagataccaccaagctgttacattgttcccaagaatcgaactt |
43063851 |
T |
|
| Q |
312 |
aacatcatcttagttccatggtggaaggatttgat |
346 |
Q |
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| T |
43063852 |
aacatcatcttagttccatggtggaaggatttgat |
43063886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 346
Target Start/End: Complemental strand, 43182590 - 43182446
Alignment:
| Q |
205 |
gttttggcattgtcgatttagtcaaccctagaagcaatttgaggtg---gaagacagcgattaatccaagataccaccaagctgttacattgttcccaag |
301 |
Q |
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| T |
43182590 |
gttttggcattgtcggtttagtcagcgctagaagaaatttgaggtgaaagaagacagcaagtaatccaatatacaaacatgctgttacatcgttcccata |
43182491 |
T |
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| Q |
302 |
aatcgaacttaacatcatcttagttccatggtggaaggatttgat |
346 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
43182490 |
aatcgaacttaacatcatcttagttacatggttgaaggatttgat |
43182446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 43182710 - 43182592
Alignment:
| Q |
13 |
aagaatatttcacagaacacatacaatctttaatagggcataaagcctataattcatcccaaagggttttcaaataagtgaaaagattagttacatatcg |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| | ||||||||| ||||||| ||||||||||||||| | |
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| T |
43182710 |
aagaatatttcacagaacacatacaatctttaatacggcataaagcctctaattcgtcccatacggttttcaacaaagtgaagagattagttacatattg |
43182611 |
T |
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| Q |
113 |
tacatcttgtttgacagag |
131 |
Q |
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| || ||||||||| |||| |
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| T |
43182610 |
ttcaccttgtttgaaagag |
43182592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 346
Target Start/End: Complemental strand, 43180409 - 43180247
Alignment:
| Q |
185 |
ttctttgagattatcccagtg--ttttggcattgtcgatttagtcaaccctagaagcaatttgaggtggaagacagcgattaatccaagataccaccaag |
282 |
Q |
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||||||||||||||| ||| | ||||||| || |||||| ||| ||| ||||||| ||||||||| | ||||| ||||||||| |||||| |||| | | |
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| T |
43180409 |
ttctttgagattatcacagagggttttggctttctcgatt-agtgaacgctagaagaaatttgaggcgaaagactgcgattaattcaagatgccactatg |
43180311 |
T |
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| Q |
283 |
ctgttacattgttcccaagaatcgaacttaacatcatcttagttccatggtggaaggatttgat |
346 |
Q |
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| |||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43180310 |
ccattacatcgttctcaagaattgaacttaacatcatcttagctccatggtggaaggatttgat |
43180247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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