View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14777_low_7 (Length: 344)
Name: NF14777_low_7
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14777_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 1318420 - 1318123
Alignment:
| Q |
14 |
acacaagccaagaacagatcacctagaccttcttagcaatctacagcaaataatattgaatgctgcaaacattgtcacaagttgtgacataaataataat |
113 |
Q |
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| T |
1318420 |
acacaggccaagaacagatcacctagaccttcttagtaatctacagcaaataatattgaatgctgcaaacattgtcacaagttgtgacataaacaataat |
1318321 |
T |
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| Q |
114 |
gctctaaggctacaatattcattgctaccacaaagtttggtaaatgatgttttaggatttaataataacatacaaagtttttatgatggttccaatattg |
213 |
Q |
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| T |
1318320 |
gctctaaggctacaatattcattgctaccacaaagtttggtaaatgatgttttaggatttaataataacatacaaagtttttatgatggttccaatattg |
1318221 |
T |
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| Q |
214 |
gtgtttcttctcaaacaattcaacctaatttgcaaaactttgaagcccctcttcagcaattactaccacaagaatttgagtgctctcagaaatttggt |
311 |
Q |
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| T |
1318220 |
gtatttcttctcaaacaattcaacctaatttgcaaaactttgaagcccctcttcagcaattactaccacaagaatttgagtgctctcagaaatttggt |
1318123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 1284193 - 1284329
Alignment:
| Q |
173 |
taataataacatacaaagtttttatgatggttccaatattggtgtttcttctcaaacaattcaacctaatttgcaaaactttgaagcccctcttcagcaa |
272 |
Q |
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| T |
1284193 |
taataattacctacaaaatttgtatgatggttccaatattggttttccatctcaaataattcagcctaatttgcaaaattttgaggcccctattgagcaa |
1284292 |
T |
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| Q |
273 |
ttactacc---acaagaatttgagtgctctcagaaat |
306 |
Q |
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| T |
1284293 |
ttacgaccaatacaagaatgtgagtactctaagaaat |
1284329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 1283974 - 1284063
Alignment:
| Q |
14 |
acacaagccaagaacagatcacctagaccttcttagcaatctacagcaaataatattgaatgctgcaaacattgtcacaagttgtgacat |
103 |
Q |
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| T |
1283974 |
acacaagccaagaccagattacatagaccttcctagctatttacaacaaataatattgaaggctgcaaatattgtcgccaattgtgacat |
1284063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 1318115 - 1318082
Alignment:
| Q |
307 |
ttggtaacacaaattttgcttcaacagtattatc |
340 |
Q |
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| T |
1318115 |
ttggtaacacaaattttgcttcaacagtattatc |
1318082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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