View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14777_low_9 (Length: 329)

Name: NF14777_low_9
Description: NF14777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14777_low_9
NF14777_low_9
[»] chr2 (8 HSPs)
chr2 (18-215)||(33861160-33861357)
chr2 (220-329)||(33861403-33861512)
chr2 (63-215)||(34691196-34691343)
chr2 (63-215)||(34713608-34713755)
chr2 (79-215)||(16232559-16232692)
chr2 (229-322)||(34691398-34691491)
chr2 (229-322)||(34713810-34713903)
chr2 (231-313)||(16232749-16232831)
[»] chr5 (2 HSPs)
chr5 (18-199)||(16349463-16349644)
chr5 (237-321)||(16352209-16352293)
[»] chr4 (3 HSPs)
chr4 (18-200)||(4231791-4231973)
chr4 (220-323)||(19964610-19964713)
chr4 (219-321)||(4232030-4232132)
[»] chr1 (23 HSPs)
chr1 (17-215)||(7890811-7891006)
chr1 (18-215)||(3301054-3301248)
chr1 (18-215)||(45993259-45993453)
chr1 (18-199)||(43066455-43066636)
chr1 (63-215)||(45983479-45983628)
chr1 (18-199)||(43045318-43045499)
chr1 (18-199)||(43045771-43045952)
chr1 (18-199)||(43084199-43084380)
chr1 (225-321)||(45983332-45983428)
chr1 (61-200)||(38137639-38137778)
chr1 (219-321)||(3301293-3301395)
chr1 (224-321)||(43084443-43084540)
chr1 (220-316)||(38137485-38137581)
chr1 (225-321)||(45993112-45993208)
chr1 (63-215)||(7888546-7888695)
chr1 (220-324)||(7890661-7890765)
chr1 (84-215)||(40034467-40034595)
chr1 (224-321)||(43046015-43046112)
chr1 (143-200)||(51292064-51292121)
chr1 (225-321)||(51292184-51292280)
chr1 (220-298)||(7888422-7888500)
chr1 (21-107)||(43076660-43076746)
chr1 (238-321)||(40034320-40034403)
[»] chr8 (8 HSPs)
chr8 (63-200)||(4620059-4620196)
chr8 (63-215)||(1846761-1846910)
chr8 (63-215)||(4787277-4787426)
chr8 (231-312)||(4620265-4620346)
chr8 (64-200)||(4297843-4297979)
chr8 (237-321)||(4787130-4787214)
chr8 (220-321)||(1846956-1847060)
chr8 (244-312)||(4298061-4298129)
[»] chr6 (4 HSPs)
chr6 (219-321)||(7519339-7519441)
chr6 (21-199)||(7519499-7519677)
chr6 (219-321)||(7528710-7528812)
chr6 (162-199)||(7528870-7528907)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 33861160 - 33861357
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  33861160 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacagtgtaccggt 33861259  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33861260 actggtttgtctcaaaattacgcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaacccaattagcatacttgaat 33861357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 33861403 - 33861512
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33861403 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttcccagagtcaacatgaccaataaccacaatgttaatatgaaact 33861502  T
Q  320 ttggcgttgg 329  Q
    ||||||||||    
T  33861503 ttggcgttgg 33861512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 34691196 - 34691343
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||||||||  ||||||||||||| || |||||||||| |||| |   ||||| | |||||||||| ||  ||||||||| |||||||| |||||    
T  34691196 atcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt--gcatagaaatgtcaattgtgatac 34691293  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    |||||||||||||||| |||||||||||||| |||||   |||||||||||||    
T  34691294 ctctttcacgctcagcgttgagcttgtcaagcaccca---agcatacttgaat 34691343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 34713608 - 34713755
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||||||||  ||||||||||||| || |||||||||| |||| |   ||||| | |||||||||| ||  ||||||||| |||||||| |||||    
T  34713608 atcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt--gcatagaaatgtcaattgtgatac 34713705  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    |||||||||||||||| |||||||||||||| |||||   |||||||||||||    
T  34713706 ctctttcacgctcagcgttgagcttgtcaagcaccca---agcatacttgaat 34713755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 16232559 - 16232692
Alignment:
Q  79 aatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagc 178  Q
    ||||||||||||| |||||||||||||  ||| |   ||||| | |||||||||| || | ||| |||| |||||||| |||||||||||||||||||||    
T  16232559 aatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagc 16232658  T
Q  179 cttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    ||||||||||||||| |||||   |||||||||||||    
T  16232659 cttgagcttgtcaagcaccca---agcatacttgaat 16232692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 34691398 - 34691491
Alignment:
Q  229 tcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaactttg 322  Q
    ||||||| |||||||||||  | ||||||||| |  || |||||||||| |||||  ||||||||||||| ||||||||| ||||||| |||||    
T  34691398 tcaatacctccaagcttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaacctttg 34691491  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 34713810 - 34713903
Alignment:
Q  229 tcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaactttg 322  Q
    ||||||| |||||||||||  | ||||||||| |  || |||||||||| |||||  ||||||||||||| ||||||||| ||||||| |||||    
T  34713810 tcaatacctccaagcttgtaaatcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaacctttg 34713903  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 16232749 - 16232831
Alignment:
Q  231 aatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatat 313  Q
    ||||| |||||||||||  |||||||||||||  || |||||||||| ||| |  |||||||||||||  |||||||| ||||    
T  16232749 aatacctccaagcttgtaaagcaaatgaccggcagtagttgacttcccagaattgacatgaccaataaagacaatgttgatat 16232831  T

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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 16349463 - 16349644
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    |||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||| |||| |  |||    
T  16349463 gaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggt 16349562  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    ||| | |||||||||||||   |||||||  |||||||| |||||||||||| |||||||||||||| ||||||||||||||    
T  16349563 acttggttgtctcaaaattcaacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaaccca 16349644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 16352209 - 16352293
Alignment:
Q  237 tccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    ||||||||||| || |||||||||||  ||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||    
T  16352209 tccaagcttgtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttt 16352293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 4231791 - 4231973
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| |||| ||| |||||||| | |||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||| | | ||    
T  4231791 gaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagt 4231890  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaa 200  Q
    |||   | |||||||| || | || || || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4231891 acttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaa 4231973  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 19964713 - 19964610
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 319  Q
    ||||| ||||||||| ||||||||||||||| ||| ||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  19964713 acatggttgtcaatatatccaagcttgtggatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaacatgaatct 19964614  T
Q  320 ttgg 323  Q
    ||||    
T  19964613 ttgg 19964610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 4232030 - 4232132
Alignment:
Q  219 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 318  Q
    |||| |||||||||||| ||||||||||| || ||| ||||| || || |||||||||| |||||| ||||| ||||| || ||||||||||| |||| |    
T  4232030 cacacgcttgtcaatacctccaagcttgtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaacc 4232129  T
Q  319 ttt 321  Q
    |||    
T  4232130 ttt 4232132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 7891006 - 7890811
Alignment:
Q  17 agaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactgg 116  Q
    |||||||| |||||||| ||| || ||||| | ||| |  ||| | ||||||||||||||  ||||||||||||||||||||||||||| |||| |  ||    
T  7891006 agaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcgg 7890907  T
Q  117 tactggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
     | | | |||||||||| || | || ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||   |||||||||||||    
T  7890906 aagttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcaccca---agcatacttgaat 7890811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 3301054 - 3301248
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| |||| ||| |||||||| | |||||| ||| ||||||||||||||||  ||||||||||||| |||||||||||||||||| | | ||    
T  3301054 gaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagt 3301153  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    |||   | |||||||| || | || || || |||||||| ||||||||||||||  ||||||||||||||||| || |||||   |||||||||||||    
T  3301154 acttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcaccca---agcatacttgaat 3301248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 45993453 - 45993259
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| |||| ||| |||||||| | ||| |||||  | ||||||||||||||  ||||||||||||| | |||||||||||||||| |   ||    
T  45993453 gaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgt 45993354  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    ||| |||||||||||| ||   || ||||  |||||||| |||||||||||||||||||| ||||||||||||||| |||||   |||||||||||||    
T  45993353 acttgtttgtctcaaacttcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcaccca---agcatacttgaat 45993259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 43066636 - 43066455
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| ||||  || |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||    
T  43066636 gaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagt 43066537  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    ||| | |||||||||| || |  | || || |||||| | ||||||||||||||| ||||||||||||||||||||||||||    
T  43066536 acttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaaccca 43066455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 45983628 - 45983479
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||| | | ||||| |||||||||||| ||   ||  | || ||||||||  | ||    
T  45983628 atcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaacttcgacagggtaatgtcaattgtaacac 45983529  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    |||||||||| |||||||||||||||||||| |||||   |||||||||||||    
T  45983528 ctctttcacgttcagccttgagcttgtcaagcaccca---agcatacttgaat 45983479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43045318 - 43045499
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| ||||  || |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||    
T  43045318 gaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagt 43045417  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    ||| | |||||||||| || |  | || || |||||| | ||||||||||||||| |||||||||||||||||||| |||||    
T  43045418 acttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca 43045499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43045771 - 43045952
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| ||||  || |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||    
T  43045771 gaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagt 43045870  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    ||| | |||||||||| || |  | || || |||||| | ||||||||||||||| |||||||||||||||||||| |||||    
T  43045871 acttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca 43045952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43084199 - 43084380
Alignment:
Q  18 gaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggt 117  Q
    ||||||| ||| ||||  || |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||    
T  43084199 gaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagt 43084298  T
Q  118 actggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    ||| | |||||||||| || |  | || || |||||| | ||||||||||||||| |||||||||||||||||||| |||||    
T  43084299 acttggttgtctcaaacttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggaccca 43084380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 45983428 - 45983332
Alignment:
Q  225 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||||||  ||||| ||||||||||||||||||||||||||| ||| ||||    
T  45983428 cttgtgaatacatccaagtttgtggatcaaatgaccagtagtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaaccttt 45983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 38137778 - 38137639
Alignment:
Q  61 taatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagat 160  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||| |||| | | ||||| | | |||||||| ||   || ||||| |||||| | |||    
T  38137778 taatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgat 38137679  T
Q  161 acctctttcacgctcagccttgagcttgtcaagaacccaa 200  Q
    ||||||||||||||| |||||||||||||| || ||||||    
T  38137678 acctctttcacgctcggccttgagcttgtcgagcacccaa 38137639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 3301293 - 3301395
Alignment:
Q  219 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 318  Q
    |||| |||||||||||| ||||||||||| || ||| |||||||| |||||||||||||  ||||| ||||||||||| || ||||||||||| |||| |    
T  3301293 cacacgcttgtcaatacctccaagcttgtagatcaagtgaccggtggtggttgacttcccggagtcgacatgaccaatgacaacaatgttaatgtgaacc 3301392  T
Q  319 ttt 321  Q
    |||    
T  3301393 ttt 3301395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 43084443 - 43084540
Alignment:
Q  224 gcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    |||||||||||| ||||||||||| || ||| ||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||| || |||| ||||    
T  43084443 gcttgtcaatacctccaagcttgtagatcaagtgaccagttgtggttgatttcccagagtcaacatggccaatgaccacaatgttgatgtgaaccttt 43084540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 38137581 - 38137485
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaa 316  Q
    |||| ||| ||||||| |||||| |||| || ||||||||| |  || |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  38137581 acatccttttcaatacctccaagtttgtagatcaaatgaccagcagtagttgacttcccagagtcaacatgaccaataaccacaacgttaatatgaa 38137485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 45993208 - 45993112
Alignment:
Q  225 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    ||||| |||||||||||| |||||||  |||||||| || |||||||||||||  ||||| ||||||||||||||||||||| ||||| ||| ||||    
T  45993208 cttgtgaatacatccaagtttgtggatgaaatgaccagtagtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaaccttt 45993112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 7888695 - 7888546
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggta-ctggtttgtctcaaaattacgcatagaaacgtcaattgagata 161  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||| |||| |   ||| |||||| |||| ||| || |  | ||||| |||||||| ||||    
T  7888695 atcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggtt-gtctgaaacttccaaagagaaatgtcaattgtgata 7888597  T
Q  162 cctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    ||||||||||||||||||||||| |||||||| |||||   |||||||||||||    
T  7888596 cctctttcacgctcagccttgagtttgtcaagcaccca---agcatacttgaat 7888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 7890765 - 7890661
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaact 319  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  || ||||||||||  ||||| ||||||||||||| || |||||||||| ||||||    
T  7890765 acatccttttcaatacctccaagcttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgaccaataaacagaatgttaataggaaact 7890666  T
Q  320 ttggc 324  Q
    |||||    
T  7890665 ttggc 7890661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 40034595 - 40034467
Alignment:
Q  84 ctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttga 183  Q
    |||||||| ||||| ||||||| |||| | ||||| | | |||||||||| ||   ||| ||||  |||||||  | |||||||||||||||||||||||    
T  40034595 ctgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacctctttcacgctcagccttga 40034496  T
Q  184 gcttgtcaagaacccaattagcatacttgaat 215  Q
    |||||||||| |||||   |||||||||||||    
T  40034495 gcttgtcaagtaccca---agcatacttgaat 40034467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 43046015 - 43046112
Alignment:
Q  224 gcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    |||||||||||| ||||||||||| || ||| ||||| || |||||||| |||| |||||| ||||| ||||| ||||||||||| || |||| ||||    
T  43046015 gcttgtcaatacctccaagcttgtagatcaagtgaccagtggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttt 43046112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 51292064 - 51292121
Alignment:
Q  143 agaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaacccaa 200  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  51292064 agaaatgtcaattgtgatacctctttcacgctcagccttgaacttgtcaagcacccaa 51292121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 51292184 - 51292280
Alignment:
Q  225 cttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    ||||||||||| ||||||||||| || ||||||||| |  ||  ||||||| | | |||| ||||||||||||| ||||||||||||| ||| ||||    
T  51292184 cttgtcaatacctccaagcttgtagatcaaatgaccagcagtatttgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttt 51292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 7888500 - 7888422
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataa 298  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  |||||||||||||  || ||||||||||||||||    
T  7888500 acatccttttcaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccggaatcaacatgaccaataa 7888422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 43076746 - 43076660
Alignment:
Q  21 tcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgaca 107  Q
    |||| |||||||||||| |||||||| | ||| |||||| | ||||||||||||||  ||| | ||||||| ||| |||||||||||    
T  43076746 tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgaca 43076660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 321
Target Start/End: Complemental strand, 40034403 - 40034320
Alignment:
Q  238 ccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    |||||||||| || |||||||||    ||||||||||||| |||||| |||| ||||||||  || ||||||||||||| ||||    
T  40034403 ccaagcttgtagatcaaatgaccaccagtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttt 40034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 4620059 - 4620196
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||||||||  |||| |||||||| ||||||||||||| |||| | | ||||| | |||||||||| ||   || ||||| ||| |||| |||||    
T  4620059 atcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaacttggacagagaaatgtcgattgtgatac 4620158  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaa 200  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4620159 ctctttcacgctcagccttgagcttgtcaagcacccaa 4620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 1846761 - 1846910
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||||||||  ||||||||||||| ||||||||||||| |||| |  || | | | |||||||||| || |  | ||||| |||||||| |||||    
T  1846761 atcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatac 1846860  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    ||||||||||||| ||||||||||||||||| |||||   |||||||||||||    
T  1846861 ctctttcacgctcggccttgagcttgtcaagcaccca---agcatacttgaat 1846910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 4787426 - 4787277
Alignment:
Q  63 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatac 162  Q
    ||||||||| |||| || ||||||||||| || ||||||||||||||| | | ||||| |||||||||||| ||   |||||||| |||||||| |  ||    
T  4787426 atcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcac 4787327  T
Q  163 ctctttcacgctcagccttgagcttgtcaagaacccaattagcatacttgaat 215  Q
    |||||||||||||| ||||||| |||||||| |||||   |||||||||||||    
T  4787326 ctctttcacgctcacccttgagtttgtcaagcaccca---agcatacttgaat 4787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 4620265 - 4620346
Alignment:
Q  231 aatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaata 312  Q
    ||||| ||||||||||| || ||||||||| |  ||||||||||||| |||||| ||||||||||||| |||||| ||||||    
T  4620265 aatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaata 4620346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 4297843 - 4297979
Alignment:
Q  64 tcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaattacgcatagaaacgtcaattgagatacc 163  Q
    |||||||||||||  | ||||| ||||| ||||||||||||||| || | | ||||| |||||||||||| ||   || ||||| |||||||| |  |||    
T  4297843 tcatgttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaacttggacagagaaatgtcaattgtggcacc 4297942  T
Q  164 tctttcacgctcagccttgagcttgtcaagaacccaa 200  Q
    ||||||| | ||||| ||||| |||||||| ||||||    
T  4297943 tctttcatggtcagctttgagtttgtcaagtacccaa 4297979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 4787214 - 4787130
Alignment:
Q  237 tccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaacttt 321  Q
    ||||||||||| |||||||||| | || |||||||||||||  ||||   | |||||||||||||||||||||||| ||| ||||    
T  4787214 tccaagcttgtagagcaaatgagcagtggtggttgacttcccggagttggcttgaccaataaccacaatgttaatacgaaccttt 4787130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 1846956 - 1847060
Alignment:
Q  220 acatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatg---accaataaccacaatgttaatatgaa 316  Q
    |||| ||| ||||||| ||||||||||| || ||||||||| |  || ||||||||||  ||||| |||||   |||||||| || |||||||||| |||    
T  1846956 acatccttttcaatacctccaagcttgtagatcaaatgaccagccgtcgttgacttcccggagtcgacatgaccaccaataaacagaatgttaataggaa 1847055  T
Q  317 acttt 321  Q
    |||||    
T  1847056 acttt 1847060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 4298061 - 4298129
Alignment:
Q  244 ttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaata 312  Q
    |||| |||||||||| | || |||||||||||||  ||||   |||| |||||||||||||||||||||    
T  4298061 ttgtagagcaaatgagcagtagtggttgacttcccggagttggcatggccaataaccacaatgttaata 4298129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 7519441 - 7519339
Alignment:
Q  219 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 318  Q
    |||| |||||||||||| ||| ||||||| || ||| ||||| ||||| ||||| || | |||||| ||||| ||||| || |||||||| ||||||| |    
T  7519441 cacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacaacaatgttgatatgaatc 7519342  T
Q  319 ttt 321  Q
    |||    
T  7519341 ttt 7519339  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 7519677 - 7519499
Alignment:
Q  21 tcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtact 120  Q
    |||| |||||| | ||| |||||||| | ||| || ||| ||||||||||||| ||  |||| |  ||||| || ||||||||||| ||| | | |||||    
T  7519677 tcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtact 7519578  T
Q  121 ggtttgtctcaaaattacgcatagaaacgtcaattgagatacctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
     | | |||||||| || | || || ||  ||||| |  || |||||||||||||||||||| |||||||||||||||||    
T  7519577 tggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaaccca 7519499  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 321
Target Start/End: Complemental strand, 7528812 - 7528710
Alignment:
Q  219 cacatgcttgtcaatacatccaagcttgtggagcaaatgaccggttgtggttgacttccaagagtcaacatgaccaataaccacaatgttaatatgaaac 318  Q
    |||| |||||||||||| ||| ||||||| || ||| ||||| ||||| ||||| || | |||||| ||||| ||||| || |||||||| ||||||| |    
T  7528812 cacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacgacaatgttgatatgaatc 7528713  T
Q  319 ttt 321  Q
    |||    
T  7528712 ttt 7528710  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7528907 - 7528870
Alignment:
Q  162 cctctttcacgctcagccttgagcttgtcaagaaccca 199  Q
    |||||||||||||||||||| || ||||||||||||||    
T  7528907 cctctttcacgctcagccttaagtttgtcaagaaccca 7528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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