View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_high_11 (Length: 323)
Name: NF14778_high_11
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 38752475 - 38752782
Alignment:
| Q |
16 |
gagatgaacaaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
115 |
Q |
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| T |
38752475 |
gagatgaacaaacctgttgctggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
38752574 |
T |
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| Q |
116 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
215 |
Q |
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| T |
38752575 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
38752674 |
T |
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| Q |
216 |
tcatggcaaaagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
315 |
Q |
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| T |
38752675 |
tcatggcaaaagtaaggtgcaaaaatacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
38752774 |
T |
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| Q |
316 |
taagaatt |
323 |
Q |
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| T |
38752775 |
taagaatt |
38752782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 299
Target Start/End: Complemental strand, 30904236 - 30903962
Alignment:
| Q |
25 |
aaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgcagcttcaca |
124 |
Q |
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| T |
30904236 |
aaacctgttgttgtagggcaaaaatatgtgaaacacatccataaataggatcttgaagtctagcttgagcttcataagagattgtaacagcggcttcgca |
30904137 |
T |
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| Q |
125 |
acgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgttcatggcaa |
224 |
Q |
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| T |
30904136 |
gcgatcacttacagggagatgagcaagaagctttgagacattgcttgcaccaaaaaccttatgaatggctgaaaaatgtgtagcaccttgttcatgagaa |
30904037 |
T |
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| Q |
225 |
aagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaa |
299 |
Q |
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|| ||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
30904036 |
aaataaggtgcaaaaacacaacctcttatacattttcttctcaaaaatttgcaagctccacaaggagaaccagaa |
30903962 |
T |
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