View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14778_high_15 (Length: 271)

Name: NF14778_high_15
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14778_high_15
NF14778_high_15
[»] chr2 (10 HSPs)
chr2 (18-261)||(45166257-45166496)
chr2 (185-235)||(18570979-18571029)
chr2 (185-235)||(31026702-31026752)
chr2 (183-231)||(22131254-22131302)
chr2 (183-236)||(4229408-4229461)
chr2 (183-220)||(14373427-14373464)
chr2 (185-230)||(45000848-45000893)
chr2 (191-235)||(12748691-12748735)
chr2 (185-221)||(37402086-37402122)
chr2 (184-236)||(44605140-44605192)
[»] chr7 (8 HSPs)
chr7 (185-235)||(2525846-2525896)
chr7 (183-235)||(36314627-36314679)
chr7 (187-235)||(38134410-38134458)
chr7 (185-235)||(20427637-20427687)
chr7 (185-234)||(24146824-24146873)
chr7 (186-245)||(16827639-16827696)
chr7 (178-234)||(17851439-17851495)
chr7 (191-235)||(44172898-44172942)
[»] chr4 (12 HSPs)
chr4 (185-235)||(56049884-56049933)
chr4 (183-235)||(18513241-18513293)
chr4 (185-236)||(25390888-25390939)
chr4 (188-235)||(14465299-14465346)
chr4 (182-221)||(40224497-40224536)
chr4 (185-231)||(3568852-3568898)
chr4 (183-233)||(11110212-11110262)
chr4 (185-234)||(33950144-33950193)
chr4 (182-235)||(43299970-43300023)
chr4 (182-235)||(43300623-43300676)
chr4 (191-235)||(5654599-5654643)
chr4 (187-235)||(24846782-24846830)
[»] chr3 (4 HSPs)
chr3 (185-235)||(20691326-20691376)
chr3 (185-235)||(40150573-40150623)
chr3 (182-231)||(23271993-23272042)
chr3 (185-221)||(27513664-27513700)
[»] chr1 (7 HSPs)
chr1 (185-235)||(19637775-19637825)
chr1 (185-234)||(31667433-31667482)
chr1 (206-245)||(1314203-1314242)
chr1 (183-234)||(30847720-30847771)
chr1 (182-245)||(11412767-11412827)
chr1 (182-234)||(1864879-1864931)
chr1 (174-234)||(38075961-38076021)
[»] chr5 (7 HSPs)
chr5 (183-235)||(14818303-14818354)
chr5 (185-236)||(17925174-17925225)
chr5 (184-235)||(19737483-19737534)
chr5 (125-153)||(36577616-36577644)
chr5 (183-235)||(38749563-38749615)
chr5 (185-245)||(40211953-40212013)
chr5 (183-231)||(43208274-43208322)
[»] chr6 (5 HSPs)
chr6 (185-232)||(9024178-9024225)
chr6 (185-234)||(9617442-9617491)
chr6 (185-233)||(9629392-9629440)
chr6 (187-231)||(10157995-10158039)
chr6 (185-221)||(32980979-32981015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (185-235)||(99900-99950)
[»] scaffold0011 (1 HSPs)
scaffold0011 (185-235)||(240023-240073)
[»] chr8 (6 HSPs)
chr8 (185-235)||(12985399-12985449)
chr8 (186-235)||(3508059-3508108)
chr8 (194-234)||(29198490-29198530)
chr8 (186-234)||(31236580-31236628)
chr8 (185-221)||(31548295-31548331)
chr8 (193-237)||(34201056-34201100)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 45166257 - 45166496
Alignment:
Q  18 cttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatcttcaatgatttnnnnnnnnnnnnnngtgttttatatggtagtatttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  45166257 cttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatcttcaatgatttaaaaaaaaaa----gtgttttatatggtagtatttg 45166352  T
Q  118 agccaatgaagcacagacacttcttggattaggcgttgtcccagcatcggacaaatatcgatgcccaacaccgacacatatgattacattgaactatgtc 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  45166353 agccaatgaagcacagacactccttggattaggcgttgtcccagcatcggacacatatcgatgcccaacaccgacacatatggttacattgaactatgtc 45166452  T
Q  218 atttgctaaaattattattatcggtgtcgcgcatagtatctgtg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45166453 atttgctaaaattattattatcggtgtcgcgcatagtatctgtg 45166496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 18571029 - 18570979
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattat 18570979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 31026752 - 31026702
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||| |||||||||||||||| |||||||||| || ||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattat 31026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 22131254 - 22131302
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 231  Q
    |||||||||||||| |||||||||||||| ||||||||| || ||||||    
T  22131254 caacaccgacacatgtgattacattgaacaatgtcattttctcaaatta 22131302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 4229408 - 4229461
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 236  Q
    ||||| ||||||||||||||||| |||| |||||||||  || |||||||||||    
T  4229408 caacatcgacacatatgattacactgaattatgtcattctcttaaattattatt 4229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 14373427 - 14373464
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatt 220  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  14373427 caacaccgacacatgtgattacattgaattatgtcatt 14373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 45000848 - 45000893
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaatt 230  Q
    |||||||||||||||||||||||||| | |||||||| || |||||    
T  45000848 acaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 12748735 - 12748691
Alignment:
Q  191 acacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||| |||||||||| ||||||||||||||| || ||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattat 12748691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 37402086 - 37402122
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcattt 221  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37402086 acactgacacatatgattacattgaattatgtcattt 37402122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 44605140 - 44605192
Alignment:
Q  184 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 236  Q
    ||||||||||||| | ||||||||||| ||||| |||| || |||||||||||    
T  44605140 aacaccgacacatgtaattacattgaattatgttattttctcaaattattatt 44605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 2525846 - 2525896
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  2525846 acaccgacacatatgattatattgaattatgtcatttgctcaaattattat 2525896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 36314627 - 36314679
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||| |||||||||||||||||||| |||||||||| || ||||||||||    
T  36314627 caacaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 38134410 - 38134458
Alignment:
Q  187 accgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20427637 - 20427687
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||||||| || |||||||| | || ||||||||||    
T  20427637 acaccgacacatatgattacatttaaatatgtcatcttctcaaattattat 20427687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    |||||||||||||| |||| |||||| ||||| |||| ||||||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 16827696 - 16827639
Alignment:
Q  186 caccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 245  Q
    |||| |||||| |||||||||||||  |||||||||||| |||||||  |||||||||||    
T  16827696 caccaacacatgtgattacattgaatcatgtcatttgctcaaattat--ttatcggtgtc 16827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 17851495 - 17851439
Alignment:
Q  178 atgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||| ||||| ||||||||| |||||| |||| ||||| |||| ||||||||||||    
T  17851495 atgcctaacacagacacatataattacactgaattatgtgattttctaaaattatta 17851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 44172898 - 44172942
Alignment:
Q  191 acacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 56049933 - 56049884
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  56049933 acaccgacacatatgattacattgaactatgtcattt-ctcaaattattat 56049884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 18513241 - 18513293
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18513241 caacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 25390888 - 25390939
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 236  Q
    ||||||||||||||| ||| |||||| |||||||||| ||||||||||||||    
T  25390888 acaccgacacatatggttatattgaattatgtcattttctaaaattattatt 25390939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 14465299 - 14465346
Alignment:
Q  188 ccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||||||||||||| |||||| |||||||||| || ||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattat 14465346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 40224497 - 40224536
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcattt 221  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  40224497 ccaacaccgacacatatgattacattaaattatgtcattt 40224536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 3568852 - 3568898
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaatta 231  Q
    ||||||||||||||||||  ||||||||||||||||| || ||||||    
T  3568852 acaccgacacatatgatttaattgaactatgtcattttctcaaatta 3568898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 11110262 - 11110212
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatt 233  Q
    ||||| |||||||||||||||||| ||| |||||||||| || ||||||||    
T  11110262 caacatcgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||||||||||||||||||||| || ||||| |||| || |||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 43299970 - 43300023
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||| || |||||||||||||||| ||||| |||| || ||||||||||    
T  43299970 ccaacaccggcagatatgattacattgaattatgtaattttctcaaattattat 43300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 43300676 - 43300623
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||| ||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  43300676 ccaacagcgacaaatatgattacattgaattatgtaattttctcaaattattat 43300623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 5654599 - 5654643
Alignment:
Q  191 acacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||| ||||||||||||||| |||||||||| || ||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattat 5654643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 24846782 - 24846830
Alignment:
Q  187 accgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||| ||||||||| |||| |||| ||||||||||||| ||||||||||    
T  24846782 accgtcacatatgagtacagtgaattatgtcatttgctcaaattattat 24846830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 20691376 - 20691326
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||||| |||| |||||||||| || ||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 40150573 - 40150623
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||||||||||||||||||||||| ||| |||||| || ||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattattat 40150623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 23271993 - 23272042
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaatta 231  Q
    |||||||||||||||||||||||||| || ||||||| || || ||||||    
T  23271993 ccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 27513664 - 27513700
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcattt 221  Q
    ||||||||||||||||||||||||||  |||||||||    
T  27513664 acaccgacacatatgattacattgaataatgtcattt 27513700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 19637825 - 19637775
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  19637825 acaccgacacatatgattacattgaataatgtcattttcttaaattattat 19637775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 31667482 - 31667433
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    |||||||||||| |||||||||| || |||||||||| ||||||||||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaattatta 31667433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 1314203 - 1314242
Alignment:
Q  206 ttgaactatgtcatttgctaaaattattattatcggtgtc 245  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  1314203 ttgaactatgtcatttacttaaattattattatcggtgtc 1314242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 30847720 - 30847771
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    |||||| ||||||||||||||||||||| ||||||||||  | |||||||||    
T  30847720 caacactgacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 11412767 - 11412827
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 245  Q
    ||||||||||||| |||||| |||||||| |||||||||| || |   ||||||||||||||||    
T  11412767 ccaacaccgacacctatgatcacattgaattatgtcattttctca---tattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 1864879 - 1864931
Alignment:
Q  182 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||||||||||||||| |||||| |||| ||||| |||| || |||||||||    
T  1864879 ccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 38075961 - 38076021
Alignment:
Q  174 atcgatgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||||| || ||||||||||||||||||||| |||  ||||| |||| || |||||||||    
T  38075961 atcgatgtccgacaccgacacatatgattacactgacttatgtgatttactcaaattatta 38076021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 14818303 - 14818354
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||| |||||||||| |||||||||| || ||||||||||    
T  14818303 caacaccgacacatatgtttacattgaattatgtcattt-ctcaaattattat 14818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 17925174 - 17925225
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 236  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattatt 17925225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 19737483 - 19737534
Alignment:
Q  184 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||||||||||||| ||||||| ||||| |||| || ||||||||||    
T  19737483 aacaccgacacatatgattgcattgaattatgtaattttctcaaattattat 19737534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 36577616 - 36577644
Alignment:
Q  125 gaagcacagacacttcttggattaggcgt 153  Q
    |||||||||||||||||||||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgt 36577644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 38749563 - 38749615
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||| |||||||| ||||||||||| ||||||||||  | ||||||||||    
T  38749563 caacaccaacacatataattacattgaattatgtcattttttcaaattattat 38749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 40212013 - 40211953
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 245  Q
    ||||||| ||||||||||| |||||| ||||| |||| || || ||||||| |||||||||    
T  40212013 acaccgatacatatgattatattgaattatgtaattttctcaatttattatcatcggtgtc 40211953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 43208274 - 43208322
Alignment:
Q  183 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 231  Q
    |||||| |||| |||||||||||||||| |||||||||| || ||||||    
T  43208274 caacacagacagatatgattacattgaattatgtcattttctcaaatta 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 9024178 - 9024225
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattat 232  Q
    |||| ||||||||||||||||||||| |||||||||| || |||||||    
T  9024178 acactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattatt 233  Q
    |||||||||||||| ||||||||||| ||||| |||| || ||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  187 accgacacatatgattacattgaactatgtcatttgctaaaatta 231  Q
    |||||||||| ||||||||||||| |||||||||| || ||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 32981015 - 32980979
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcattt 221  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  32981015 acaccgacacatatgattatattgaattatgtcattt 32980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 99950 - 99900
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||| |||||||| ||||||||||| ||||| |||| |||||||||||||    
T  99950 acaccaacacatataattacattgaattatgttattttctaaaattattat 99900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 240023 - 240073
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||||||||||||||||||||||||| ||| | |||| || ||||||||||    
T  240023 acaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 12985449 - 12985399
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    ||||||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 3508108 - 3508059
Alignment:
Q  186 caccgacacatatgattacattgaactatgtcatttgctaaaattattat 235  Q
    |||| |||||||||||||||||||| ||||| |||| || ||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 29198490 - 29198530
Alignment:
Q  194 catatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  29198490 catatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  186 caccgacacatatgattacattgaactatgtcatttgctaaaattatta 234  Q
    ||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 31548295 - 31548331
Alignment:
Q  185 acaccgacacatatgattacattgaactatgtcattt 221  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  31548295 acaccgacacatgtgattacattgaattatgtcattt 31548331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 34201056 - 34201100
Alignment:
Q  193 acatatgattacattgaactatgtcatttgctaaaattattatta 237  Q
    |||||| ||||||||||| |||||||||| || ||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattatta 34201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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