View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14778_high_16 (Length: 268)
Name: NF14778_high_16
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 32147837 - 32147597
Alignment:
| Q |
14 |
agataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataaaaag |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32147837 |
agataagtaccgttgatccttacacagttttggaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataaaaag |
32147738 |
T |
|
| Q |
114 |
ggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtgcctactattgagctttatttgcagaacaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32147737 |
ggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtacctactattgagctttatttgcagaacaat |
32147638 |
T |
|
| Q |
214 |
gtgatttggaggatatttggtgcaaattcaatggtgaatat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32147637 |
gtgatttggaggatatttggtgcaaattcaatggtgaatat |
32147597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 32138447 - 32138208
Alignment:
| Q |
14 |
agataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataaaaag |
113 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
32138447 |
agattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataaagag |
32138348 |
T |
|
| Q |
114 |
ggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtgcctactattgagctttatttgcaga---ac |
210 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| | |||||| | | |
|
|
| T |
32138347 |
ggtgggttcggttgcgccttttgaattttgttacactaatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaatgaa |
32138248 |
T |
|
| Q |
211 |
aatgtgatttggaggatatttggtgcaaattcaatggtga |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32138247 |
aatgtggtttggaggatatttggtgcaaattcaatggtga |
32138208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 32126646 - 32126400
Alignment:
| Q |
14 |
agataagtacggttgatccttacacagttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcatctgctgcaagaaacataaaaag |
113 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
32126646 |
agattagtacggttgatccttacacggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacataacaac |
32126547 |
T |
|
| Q |
114 |
ggtggattcggttgcaccttttgagttttgttacact------aatgtgactgggacacgattgggtgcggatgtgcctactattgagctttatttgcag |
207 |
Q |
| |
|
| |||||| | | |||||||| |||||||| | | ||| || | ||||| | |||||||||| ||||||||| ||||||||| ||| ||| |
|
|
| T |
32126546 |
agaggattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcgtctgtgcctacaattgagcttcttttacag |
32126447 |
T |
|
| Q |
208 |
aacaatgtgatttggaggatatttggtgcaaattcaatggtgaatat |
254 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
32126446 |
aacaatgtgatttggagcatgtttggtgcaaattcgatggtgaatat |
32126400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University