View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_high_18 (Length: 243)
Name: NF14778_high_18
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 30057220 - 30057009
Alignment:
| Q |
14 |
atcagaacgatacaagcactggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacttccaaatattcaaacacaatgttgcc |
113 |
Q |
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| T |
30057220 |
atcagaacgatacaagcactggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacatccaaatattcaaacacaatgttgcc |
30057121 |
T |
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| Q |
114 |
tacattgattccttcaatgctgctgcagggaacaaatcctacaaacttgccattaatagatttgcggatctacccaccgagccttccgatgatgggttca |
213 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30057120 |
tacattgattcctttaa---tgctgcagggaacaaatcctacaaacttaccattaatagatttgcggatctacccaccgagccttccgatgatgggttca |
30057024 |
T |
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| Q |
214 |
agaagaggaaacttg |
228 |
Q |
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||||||||||||||| |
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| T |
30057023 |
agaagaggaaacttg |
30057009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 29734123 - 29733945
Alignment:
| Q |
31 |
actggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacttccaaatattcaaacacaatgttgcctacattgattccttcaa |
130 |
Q |
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| T |
29734123 |
actggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggcctacattgattacttcaa |
29734024 |
T |
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| Q |
131 |
tgctgctgcagggaacaaatcctacaaacttgccattaatagatttgcggatctacccaccgagccttccgatgatgggttc |
212 |
Q |
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| T |
29734023 |
tg---ctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggattccgatgacgggttc |
29733945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 29746097 - 29746244
Alignment:
| Q |
30 |
cactggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacttccaaatattcaaacacaatgttgcctacattgattccttca |
129 |
Q |
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|||||||||| ||| ||| |||| |||||||||||| |||||| || |||| |||||| ||||||||||||||||||| ||||||||| ||||||| |
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| T |
29746097 |
cactggaagacaaaatatggagttgtctacaaggatgttgcagaaaagaaaaaacacttcgaaatattcaaacacaatgtgatctacattgaatccttca |
29746196 |
T |
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| Q |
130 |
atgctgctgcagggaacaaatcctacaaacttgccattaatagatttgcgga |
181 |
Q |
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| T |
29746197 |
a---tgctgcagggaacaaa-cccataaacttgccattaatggatttgcgga |
29746244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 29607070 - 29606924
Alignment:
| Q |
30 |
cactggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacttccaaatattcaaacacaatgttgcctacattgattccttca |
129 |
Q |
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|||||||||| ||| ||| |||| |||||||||||| |||||| | |||| |||||||||||||||||||||||||| ||||||||| ||| | | |
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| T |
29607070 |
cactggaagacaaaatatggagttgtctacaaggatgttgcagaaaaaaaaaa-cacttccaaatattcaaacacaatgtgatctacattgaatccctaa |
29606972 |
T |
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| Q |
130 |
atgctgctgcagggaacaaatcctacaaacttgccattaatagatttgcgga |
181 |
Q |
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| T |
29606971 |
a---tgctgcaggcaacaaa-cccataaacttgccattaatggatttgcgga |
29606924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 34759249 - 34759182
Alignment:
| Q |
59 |
caaggatgatgcagaggaggaaaagcacttccaaatattcaaacacaatgttgcctacattgattcct |
126 |
Q |
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||||||||||| |||| | ||||| |||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
34759249 |
caaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaatgtggcctccattgaatcct |
34759182 |
T |
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