View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_high_20 (Length: 239)
Name: NF14778_high_20
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_high_20 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38540903 - 38540683
Alignment:
| Q |
1 |
tactaatcctaacaattgagtttatgcagatgatgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38540903 |
tactgatcctaacaattgagtttatgcagatgatgtatgaggaggctagtcaagttgcaaatgatgcagtgggaagtataagaattgtggcttctttctg |
38540804 |
T |
|
| Q |
101 |
tgccgaagataaggttatggaactatataggaagaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggatcaggattcggtgtt |
200 |
Q |
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| T |
38540803 |
tgctgaaaataaggttatggaattatataggaagaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggatcaggattcggtgtt |
38540704 |
T |
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| Q |
201 |
tcatttttcttattgttttgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38540703 |
tcatttttcttattgttttgt |
38540683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38563121 - 38562901
Alignment:
| Q |
1 |
tactaatcctaacaattgagtttatgcagatgatgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38563121 |
tactgatcctaacaattgagtttatgcagatgatgtatgaggaggctagtcaagttgcaaatgatgcagtgggaagtataagaattgtggcttctttctg |
38563022 |
T |
|
| Q |
101 |
tgccgaagataaggttatggaactatataggaagaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggatcaggattcggtgtt |
200 |
Q |
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| T |
38563021 |
tgctgaaaataaggttatggaattatataggaagaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggatcaggattcggtgtt |
38562922 |
T |
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| Q |
201 |
tcatttttcttattgttttgt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38562921 |
tcatttttcttattgttttgt |
38562901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 38523877 - 38523684
Alignment:
| Q |
25 |
tgcagatgatgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctgtgccgaagataaggttatggaact |
124 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
38523877 |
tgcagatgatgtacgaggaggctagtcaagttgcgaatgatgcagttggaagcataagaactgtggcttctttctgtgcagaagataaggttatggaact |
38523778 |
T |
|
| Q |
125 |
atataggaagaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggatcaggattcggtgtttcatttttcttattgttt |
218 |
Q |
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| T |
38523777 |
atataggaagaaatgtgaaggtcccatgaaaacaggaataaggcaagggataatcagtggatcaggattcggtgtttcatttttcttattgttt |
38523684 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 51201388 - 51201496
Alignment:
| Q |
34 |
tgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctgtgccgaagataaggttatggaactatataggaa |
133 |
Q |
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|||||||||| || ||||| || || ||||||||||| || ||||||||||| || |||||||||||| | ||||| ||||| |||||| |||||| | | |
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| T |
51201388 |
tgtatgaggaagcaagtcaagtggcgaatgatgcagtagggagtataagaacagttgcttctttctgttctgaagagaaggtgatggaattatataagca |
51201487 |
T |
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| Q |
134 |
gaaatgtga |
142 |
Q |
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|||||||| |
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| T |
51201488 |
aaaatgtga |
51201496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 29935570 - 29935418
Alignment:
| Q |
34 |
tgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctgtgccgaagataaggttatggaactatataggaa |
133 |
Q |
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|||| ||||| || ||||| || ||||||||||| || || |||||||||| || ||||||||||||| ||||| ||||| |||||| ||||| | | |
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| T |
29935570 |
tgtacgaggaagcaagtcaagtggcaaatgatgcggtagggtgtataagaacagtttcttctttctgtgctgaagagaaggtgatggaattatatgagca |
29935471 |
T |
|
| Q |
134 |
gaaatgtgaagttcccatgaaaacagggataaggcaagggataatcagtggat |
186 |
Q |
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|||||||| | || || || | ||| ||||||| ||||||||| ||||||| |
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| T |
29935470 |
aaaatgtgagggaccaattaagaaaggcataaggcgagggataataagtggat |
29935418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 36287741 - 36287828
Alignment:
| Q |
34 |
tgtatgaggaggctagtcaggttgcaaatgatgcagtgggaagtataagaaccgtggcttctttctgtgccgaagataaggttatgga |
121 |
Q |
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|||||||||| || ||||| || ||||||||||| ||| | | || ||||| || |||||||||||||| ||||| ||||||||||| |
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| T |
36287741 |
tgtatgaggaagcaagtcaagtggcaaatgatgctgtgagtaacattagaacagttgcttctttctgtgctgaagagaaggttatgga |
36287828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 26614 - 26650
Alignment:
| Q |
31 |
tgatgtatgaggaggctagtcaggttgcaaatgatgc |
67 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |
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| T |
26614 |
tgatgtatgaagaggcaagtcaggttgcaaatgatgc |
26650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 5781282 - 5781318
Alignment:
| Q |
31 |
tgatgtatgaggaggctagtcaggttgcaaatgatgc |
67 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |
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| T |
5781282 |
tgatgtatgaagaggcaagtcaggttgcaaatgatgc |
5781318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 5825841 - 5825877
Alignment:
| Q |
31 |
tgatgtatgaggaggctagtcaggttgcaaatgatgc |
67 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |
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| T |
5825841 |
tgatgtatgaagaggcaagtcaggttgcaaatgatgc |
5825877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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