View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14778_high_25 (Length: 218)

Name: NF14778_high_25
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14778_high_25
NF14778_high_25
[»] chr2 (13 HSPs)
chr2 (1-218)||(10505620-10505837)
chr2 (1-216)||(10491503-10491720)
chr2 (1-216)||(7482934-7483150)
chr2 (4-216)||(10516835-10517049)
chr2 (4-216)||(10462346-10462558)
chr2 (83-216)||(10543873-10544006)
chr2 (13-123)||(10471478-10471589)
chr2 (115-203)||(10487078-10487167)
chr2 (39-216)||(10847636-10847815)
chr2 (3-212)||(10859329-10859538)
chr2 (145-216)||(10859187-10859256)
chr2 (179-216)||(28106105-28106142)
chr2 (149-205)||(9081200-9081255)
[»] chr5 (2 HSPs)
chr5 (13-124)||(33601210-33601322)
chr5 (71-153)||(40112122-40112204)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10505837 - 10505620
Alignment:
Q  1 gtgcttctgctatttggatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaacg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10505837 gtgcttctgctatttggatggaattaacgattacagatggtgaaccatagaagaaggcctaaaatcctccatttttagccattatttccgccataaaacg 10505738  T
Q  101 gcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggct 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10505737 ccatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggct 10505638  T
Q  201 tgaataatacatacaaac 218  Q
    ||||||||||||||||||    
T  10505637 tgaataatacatacaaac 10505620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10491720 - 10491503
Alignment:
Q  1 gtgcttctgctatttg-gatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaac 99  Q
    |||||||||||||||  |||||| ||||||||| ||||||||||||| ||||| ||||| |||  |||||||||| |||||| ||||| | |||||||||    
T  10491720 gtgcttctgctattttagatggagttaacgattgcagatggtgaaccctagaagaaggcttaatgtcctccatttgtagccactattttccccataaaac 10491621  T
Q  100 ggcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatct-gccatgtccactgtttgataacattgattttgg 198  Q
      |||| |||| |||||||||||||||||| |||||||||| ||||||||||||||  ||||||||  ||||||| ||| ||||||||||||||||||||    
T  10491620 tccatcttgccgccatccttcacaagttggtcgtagctgtttgcaaaaaatccttcattgcaatctccccatgtctactatttgataacattgattttgg 10491521  T
Q  199 cttgaataatacatacaa 216  Q
    ||||||||||| ||||||    
T  10491520 cttgaataatatatacaa 10491503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7482934 - 7483150
Alignment:
Q  1 gtgcttctgctattt-ggatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaac 99  Q
    ||||||||||||||| |||| ||||| |||||| ||||| ||||||||||||  ||||| |||  |||||| |||||||||| ||||||| |||||||||    
T  7482934 gtgcttctgctattttggattgaatttacgattgcagattgtgaaccatagatgaaggcttaatgtcctccgtttttagccactatttcccccataaaac 7483033  T
Q  100 ggcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatct-gccatgtccactgtttgataacattgattttgg 198  Q
    | |||| |||||||| ||||||||||||||||||||||||| || ||||||||||   ||||||||  ||||||||||| |||||||| ||||| | |||    
T  7483034 gccatcttgccaccaaccttcacaagttggccgtagctgtttgccaaaaatcctttattgcaatctccccatgtccactatttgataatattga-tatgg 7483132  T
Q  199 cttgaataatacatacaa 216  Q
    ||||| ||||||||||||    
T  7483133 cttgagtaatacatacaa 7483150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 10517049 - 10516835
Alignment:
Q  4 cttctgctattt-ggatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccat--tatttccgccataaaacg 100  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||||    |||||||||||||||| |    
T  10517049 cttctgctattttggatggagttaacgattacatttggtgaaccatagaagaaggccaaaaatcctccatttttagccccgctatttccgccataaaatg 10516950  T
Q  101 gcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggct 200  Q
     |||| |||| |||| |||||||| |||||| ||||||||   ||||||||||||  |||| ||||||||| ||||| ||||||||| |||||||||| |    
T  10516949 ccatc-tgccgccatacttcacaaattggccatagctgttgcaaaaaaatccttcactgcattctgccatggccactatttgataactttgattttgggt 10516851  T
Q  201 tgaataatacatacaa 216  Q
    |||| |||||||||||    
T  10516850 tgaacaatacatacaa 10516835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 10462558 - 10462346
Alignment:
Q  4 cttctgctatttgga-tggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaacggc 102  Q
    |||||||||||| || |||| |||||||||||||| |||| |||||| || |||| ||||||||||||| ||||||||  |||||| ||| ||||||  |    
T  10462558 cttctgctatttcgaatggagttaacgattacagacggtggaccatataagaaggtctaaaatcctccacttttagccgctatttctgccttaaaacacc 10462459  T
Q  103 atcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggcttg 202  Q
    ||  ||||  |||||||||||| |||||| |||||||| ||||||||| ||||  |||||||||||||| ||||| ||||| ||||||||||||| ||||    
T  10462458 attgtgccgtcatccttcacaaattggccatagctgtt-gcaaaaaattcttcactgcaatctgccatggccactatttgacaacattgattttgtcttg 10462360  T
Q  203 aataatacatacaa 216  Q
    ||||||||||||||    
T  10462359 aataatacatacaa 10462346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 10544006 - 10543873
Alignment:
Q  83 tatttccgccataaaacggcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttg 182  Q
    |||||||||||| ||| | |||  |||||||||||||||||| |||||| |||| |||||| |||||||||||  |||||||||||||| ||||| ||||    
T  10544006 tatttccgccatgaaatgccatggtgccaccatccttcacaaattggccatagcggttcgcgaaaaatccttcgctgcaatctgccatggccactatttg 10543907  T
Q  183 ataacattgattttggcttgaataatacatacaa 216  Q
    ||||| ||||||||||||||||||||||| ||||    
T  10543906 ataacgttgattttggcttgaataatacacacaa 10543873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 10471589 - 10471478
Alignment:
Q  13 tttggatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccat-ttttagccattatttccgccataaaacggcatcatgcca 111  Q
    |||||||||| |||| |||||| |||||||||||||| || ||||| ||||||||||||| ||||||||  ||||||| |||||||||| |||| ||| |    
T  10471589 tttggatggagttaatgattacggatggtgaaccataaaagaaggcttaaaatcctccattttttagccgctatttccaccataaaacgccatcgtgcta 10471490  T
Q  112 ccatccttcaca 123  Q
    ||||||||||||    
T  10471489 ccatccttcaca 10471478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 10487167 - 10487078
Alignment:
Q  115 tccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatct-gccatgtccactgtttgataacattgattttggcttga 203  Q
    ||||||||||||||||||| |||||| ||| ||||||||||  ||||||||  |||||||||||  ||||||||||||||||||||||||    
T  10487167 tccttcacaagttggccgtggctgtttgcagaaaatccttcattgcaatctccccatgtccactacttgataacattgattttggcttga 10487078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 10847815 - 10847636
Alignment:
Q  39 ggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaacggcatcatgccaccatcctt---cacaagttggccgtag 135  Q
    |||||||||| ||| |||||| ||| |||||||| ||||| || |||||| ||||||||||  |||  |||| || || ||   ||||| |||||| |      
T  10847815 ggtgaaccatggaagaaggccaaaagtcctccatctttaggcactatttctgccataaaacaccatggtgccgccgtctttgatcacaaattggccatca 10847716  T
Q  136 ctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggcttgaataatacatacaa 216  Q
    | ||| ||||||| ||||||  ||||||||| |||| || || |||||||||||||||||||||||||||||| |||||||    
T  10847715 cagttggcaaaaa-tccttcactgcaatctgtcatggccgctatttgataacattgattttggcttgaataatgcatacaa 10847636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 10859538 - 10859329
Alignment:
Q  3 gcttctgctatttgga-tggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccatttttagccattatttccgccataaaacgg 101  Q
    ||||||||||||| || |||  ||||||||| ||||||||||||||| ||| ||||||   ||| ||||| ||| || |  |||||  || ||||||||     
T  10859538 gcttctgctattttgactggtgttaacgattgcagatggtgaaccatggaagaaggccattaattctccaattt-agtcgctatttttgctataaaacgt 10859440  T
Q  102 catcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggctt 201  Q
     ||  |||||||||| ||||||| || ||| ||||  || | |||||||| |||  ||  |||||||||| ||||| |||||||||| ||||| ||||||    
T  10859439 gatattgccaccatctttcacaaattagccatagcaattggtaaaaaatcattcattgtgatctgccatggccactatttgataacactgattctggctt 10859340  T
Q  202 gaataatacat 212  Q
    |||||||||||    
T  10859339 gaataatacat 10859329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 10859256 - 10859187
Alignment:
Q  145 aaaaatccttctatgcaatctgccatgtccactgtttgataacattgattttggcttgaataatacatacaa 216  Q
    |||||||||||  |||||||||  ||| || || |||||||||||||||||||||||||||||| |||||||    
T  10859256 aaaaatccttcactgcaatctg--atggccgctatttgataacattgattttggcttgaataatgcatacaa 10859187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 28106105 - 28106142
Alignment:
Q  179 tttgataacattgattttggcttgaataatacatacaa 216  Q
    |||||||||||||||||||||||||||||| |||||||    
T  28106105 tttgataacattgattttggcttgaataatgcatacaa 28106142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 9081200 - 9081255
Alignment:
Q  149 atccttctatgcaatctgccatgtccactgtttgataacattgattttggcttgaat 205  Q
    |||||||  |||||| ||||||| ||||| |||||||| ||||||||||||||||||    
T  9081200 atccttccctgcaatttgccatggccact-tttgataagattgattttggcttgaat 9081255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 33601322 - 33601210
Alignment:
Q  13 tttggatggaattaacgattacagatggtgaaccatagaacaaggcctaaaatcctccat-ttttagccattatttccgccataaaacggcatcatgcca 111  Q
    |||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||  | ||||| |||||||||  |||| ||| |    
T  33601322 tttggatggagttaacgattacagacggtgaaccataaaagaaggcataaaatcctccattttttagccgctttttccaccataaaacaccatcgtgcta 33601223  T
Q  112 ccatccttcacaa 124  Q
    |||||||||||||    
T  33601222 ccatccttcacaa 33601210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 40112204 - 40112122
Alignment:
Q  71 atttttagccattatttccgccataaaacggcatcatgccaccatccttcacaagttggccgtagctgttcgcaaaaaatcct 153  Q
    ||||| |||||| |||||| |||||||||| |||    |  |||||||||||||||||||| |||| ||| ||||||||||||    
T  40112204 attttaagccatcatttccaccataaaacgccatggaactgccatccttcacaagttggccatagcggttagcaaaaaatcct 40112122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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