View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_high_6 (Length: 429)
Name: NF14778_high_6
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 1415310 - 1415706
Alignment:
| Q |
18 |
atgatgataggtggaggagtggaggagcagagaagagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagacaagaagtgatgt |
117 |
Q |
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| T |
1415310 |
atgatgataggtggaggagtggaggagcagagaagagcaaggtgaaagtgaggaggaaacttagagagccaaggttttgtttccagacaagaagtgatgt |
1415409 |
T |
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| Q |
118 |
agatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcattcatattattct |
217 |
Q |
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| T |
1415410 |
agatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcattcatattattct |
1415509 |
T |
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| Q |
218 |
tgcttatttaatctcttcattaaaaatatatttctatatttcaaatatgttatgattattacgtataatatataggttagtactaaccgtggttgatcgg |
317 |
Q |
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| T |
1415510 |
tgcttaattaatctcttcattaaaaatatatttctatatttcaaatatgttatgattatcacgtataatatataggttaatattaaccacggttgaacgg |
1415609 |
T |
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| Q |
318 |
aagttgttgagtttcggttaaaattgtttgaaagaatatgaattgaacctcactaaaacaatcgttagtcagactttaaaattataccaaggttcat |
414 |
Q |
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| T |
1415610 |
aagttgttaaatttcgattaaaattgtttgaaagaatctgaattgaacctcactaaaacgatcgttagtcagactttaaaattataccaagcttcat |
1415706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 38496084 - 38496022
Alignment:
| Q |
112 |
tgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaa |
174 |
Q |
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| T |
38496084 |
tgatgtggatgtgttggatgatggttacaagtggaggaagtatggacaaaaagttgtaaagaa |
38496022 |
T |
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