View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_1 (Length: 955)
Name: NF14778_low_1
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 826; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 15 - 941
Target Start/End: Complemental strand, 45617928 - 45617001
Alignment:
| Q |
15 |
cagagagaaacgcaacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttatt |
114 |
Q |
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| T |
45617928 |
cagagagaaatgcaacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttatt |
45617829 |
T |
|
| Q |
115 |
aaaattagtgtttgttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcnnnnnnnnnaaacttgtatttcttttca |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
45617828 |
aaaattagtgattgttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcttattttttaaatttgtatttcttttca |
45617729 |
T |
|
| Q |
215 |
taacttcatggatatagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgat |
314 |
Q |
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| T |
45617728 |
taacttcatggatatagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgat |
45617629 |
T |
|
| Q |
315 |
attttatttaagaatgaggaagaaaaaagaaggaaagttttaatttcaaattaaccaataaaccaaactaaattgaccgttcagttttgttcagctcctc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45617628 |
attttatttaagaatgaggaagaaaaaagaaggaaagttttaatttcaaattaaccaataaaccaaactaaattgaccgttcagttttgttcaactcctc |
45617529 |
T |
|
| Q |
415 |
tttaaaaatcattgaaaactgaacctaacgaaatcgatataaatggagtaagtcggtttcgacacnnnnnnnnn-ctttcgaaaatcaaaccaaacaagt |
513 |
Q |
| |
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| T |
45617528 |
tttaaaaatcattgaaaactgaacctaaccaaatcgatataaatggagtaagtcggtttcgacacttttttttttcttccgaaaatcaaaccaaacaagt |
45617429 |
T |
|
| Q |
514 |
tggtggtaattggatacaagtataaattttaagttggatacgtgtggatatataacttgttggtccaactcaattaagtgccaataaccaaccatttaaa |
613 |
Q |
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| T |
45617428 |
tggtggtaattggatacaagtataaattttaagttggatacgtgtggatatataacttgttggtccaactcaattaagtgccaataaccaaccatttaaa |
45617329 |
T |
|
| Q |
614 |
tatgaaaagttttttatactcttaagtttttgttgggtatcaatattttgtaggtaaaattaattcaaaatttaaattaactactctatatatacaagta |
713 |
Q |
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| T |
45617328 |
tatgaaaagttttttatactcttaagtttttgttgggtatcaatattttgtaggtaaaattaattcaaaatttaaattaactactctagatatacaagtt |
45617229 |
T |
|
| Q |
714 |
aattattagatttccaaaaaatgaagtaaatgattagatgttgaatttcgtactcaacaaaacactagatattaaagtgtgcacgttaaaatatactaat |
813 |
Q |
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| T |
45617228 |
aattattagatttccaaaaaatgaagtaaatgattagatgttgagtttcatactcaacaaaacactagatattaaagtgtgcacgttaaaatatactaat |
45617129 |
T |
|
| Q |
814 |
ttatgaataaagttacagaaaaaattgcacatcaaagaagcaaaaaacttagtaataaaacgtttgcttgcatagtaatttttcccaaaatggatgaatg |
913 |
Q |
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| T |
45617128 |
ttatgaataaagttacagaaaaaattgcacatcaaagaagcaaaaaacttagtaataaaacgtttgcttgcatagtaatttttcccaaaatggatgaatg |
45617029 |
T |
|
| Q |
914 |
ccaatccaattagactataacatgaatg |
941 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
45617028 |
ccaatccaattagactataacatgaatg |
45617001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 17893127 - 17893208
Alignment:
| Q |
16 |
agagagaaacgcaacatttcttgtctagct---gttttggaacataattttgttaattaagttgaacttacatttcttgcat |
94 |
Q |
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|||| |||| ||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
17893127 |
agagggaaatgcaacatttcttgtctaactaccgttttgggacataattttgttaattaagttaaacttgcatttcatgcat |
17893208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 691
Target Start/End: Original strand, 37533148 - 37533179
Alignment:
| Q |
660 |
tttgtaggtaaaattaattcaaaatttaaatt |
691 |
Q |
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| T |
37533148 |
tttgtaggtaaaattaattcaaaatttaaatt |
37533179 |
T |
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