View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14778_low_11 (Length: 368)

Name: NF14778_low_11
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14778_low_11
NF14778_low_11
[»] chr1 (3 HSPs)
chr1 (128-361)||(4685351-4685584)
chr1 (1-78)||(4685224-4685301)
chr1 (128-192)||(4612023-4612087)
[»] chr5 (1 HSPs)
chr5 (128-248)||(5113169-5113289)
[»] chr4 (3 HSPs)
chr4 (128-266)||(53557003-53557141)
chr4 (128-242)||(40254566-40254680)
chr4 (128-248)||(21173503-21173623)
[»] chr3 (2 HSPs)
chr3 (14-78)||(24677405-24677469)
chr3 (139-265)||(47846978-47847104)
[»] chr2 (1 HSPs)
chr2 (128-258)||(40820104-40820234)
[»] chr7 (1 HSPs)
chr7 (128-264)||(41208777-41208913)
[»] chr6 (1 HSPs)
chr6 (128-180)||(34357172-34357224)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 128 - 361
Target Start/End: Original strand, 4685351 - 4685584
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685351 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 4685450  T
Q  228 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttcnnnnnnncct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  4685451 tggtggtaactggattgctctcccacaaaaaattggtaatattttcataaccctaattttttcaatatatttacatgtttgtatcctttctttttttcct 4685550  T
Q  328 tgataaatttgttactcgtccactatatcttcat 361  Q
    ||||||||||||||||||||||||||||||||||    
T  4685551 tgataaatttgttactcgtccactatatcttcat 4685584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4685224 - 4685301
Alignment:
Q  1 aataatatcaattctctctcctataattcttctgactcaagggttgtaaagatagagtagcttaccccaatcaatcat 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685224 aataatatcaattctctctcctataattcttctgactcaagggttgtaaagatagagtagcttaccccaatcaatcat 4685301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 4612087 - 4612023
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagat 192  Q
    |||| |||||||||||||||||||||| ||| || |||| ||| ||||||||||| || ||||||    
T  4612087 tgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat 4612023  T

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Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 5113169 - 5113289
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    |||| ||||||||||| ||||||||||| || || || |||||||||||||| || ||||||||| |||||||||| ||||||||||||||| |||||||    
T  5113169 tgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggtac 5113268  T
Q  228 tggtggtaactggattgctct 248  Q
    |||||| || |||||||||||    
T  5113269 tggtggaaattggattgctct 5113289  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 53557003 - 53557141
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    ||||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||||||| ||| ||||||||||||||| |||  | |||| ||    
T  53557003 tgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaac 53557102  T
Q  228 tggtggtaactggattgctctcccacaaaaaattggtaa 266  Q
    ||| || || ||||||||||| || ||||||||||||||    
T  53557103 tggaggaaattggattgctcttcctcaaaaaattggtaa 53557141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 40254680 - 40254566
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    |||| ||||||||||||||||||||||| || || |||| |||||||||||| || |||||||| || ||||||||| |||| ||  |||||||||||||    
T  40254680 tggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaagactccaaactcaaagcttatattcaacaacatggtac 40254581  T
Q  228 tggtggtaactggat 242  Q
     ||||||||||||||    
T  40254580 aggtggtaactggat 40254566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 21173503 - 21173623
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    |||| |||||||| |||||||||||| |||  || |||| |||||||||||| |||||||||||||| || || |||  |||||||||  ||||||| ||    
T  21173503 tgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagattcaaagcttaaagattacatagagaaacatggcac 21173602  T
Q  228 tggtggtaactggattgctct 248  Q
    |||||| || |||||| ||||    
T  21173603 tggtggaaattggatttctct 21173623  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 24677469 - 24677405
Alignment:
Q  14 ctctctcctataattcttctgactcaagggttgtaaagatagagtagcttaccccaatcaatcat 78  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24677469 ctctctcctataattcttctgactcgaggattgtaaagatagagtagcttaccccaatcaatcat 24677405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 47847104 - 47846978
Alignment:
Q  139 ccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtactggtggtaact 238  Q
    ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||   || |||||||| |||||  || | ||||| || ||||||||||    
T  47847104 ccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagatgacaagctcaaatcctacatccaagagcatggaaccggtggtaact 47847005  T
Q  239 ggattgctctcccacaaaaaattggta 265  Q
    ||||  || | |||||||| |||||||    
T  47847004 ggatcactttgccacaaaagattggta 47846978  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 40820234 - 40820104
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    |||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| | || ||||||   || |||||| | ||||| ||    
T  40820234 tgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaac 40820135  T
Q  228 tggtggtaactggattgctctcccacaaaaa 258  Q
    |||||| || |||||| |||| || ||||||    
T  40820134 tggtggaaattggatttctcttcctcaaaaa 40820104  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 41208913 - 41208777
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggtac 227  Q
    |||| ||| ||||||| ||||||||||| || || |||||||||||||||||||| ||||||||| | ||||| ||    ||||||||  ||||||| ||    
T  41208913 tgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaacatggaac 41208814  T
Q  228 tggtggtaactggattgctctcccacaaaaaattggt 264  Q
    ||| || ||||||||| |||| ||| ||||| |||||    
T  41208813 tggaggaaactggattactctgccaaaaaaagttggt 41208777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 34357172 - 34357224
Alignment:
Q  128 tgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtct 180  Q
    ||||||| ||||| |||||||||||| |||| ||||| | |||||||||||||    
T  34357172 tgggtagggctccatgttgtgacaaatcaaaagtgaaaagaggtccatggtct 34357224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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