View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_12 (Length: 353)
Name: NF14778_low_12
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 41996527 - 41996855
Alignment:
| Q |
17 |
agttagaaatatttttaggccaattctattgctttgagttttaggacaaagttactttacagnnnnnnnnagtactgcggttgtcacttgtgaaactatt |
116 |
Q |
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| T |
41996527 |
agttagaaatatttttaggtcaattctattgctttgagttttagtacaaagttactttacagttttttttagtactgcggttgtcacttgtgaaactatt |
41996626 |
T |
|
| Q |
117 |
gcacaacaagaacagcgtttgtatgacattcattggaaagattgatgaagtggagagaaaaaagcacaaaatgatcagattattgttggcctctcatcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41996627 |
gcacaacaagaacagcgtttgtatgacattcattggaaagattgatgaagtggaaagaaaaaagcacaaaatgatcagattattgttggcctctcatcac |
41996726 |
T |
|
| Q |
217 |
cacagaggtcttatctagctactagtttagtttgttatgtgtgactcctaacattgctacgtcctttaagaactgatttttaggatggtttttactctat |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| |
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| T |
41996727 |
cacagaggtcttatctagctactattttagtttgttatgtgtgactcctaacattgctacgtcctttaaaaactgacttttatgatagtttttactctat |
41996826 |
T |
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| Q |
317 |
aagcgatgatctgatggtagttctttctt |
345 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41996827 |
aagcgatgatctgatggtagttctttctt |
41996855 |
T |
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