View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_13 (Length: 330)
Name: NF14778_low_13
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 2623128 - 2622817
Alignment:
| Q |
19 |
ataggtccacaaattttttgcactgattgatataagccaagctggaacattataataccaacacctgaacaagtttaatatggttcaagtgtattcagat |
118 |
Q |
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| T |
2623128 |
ataggtccacaaattttttgcactgattgatataagccaagctggaacattataataccaacacctgaacaagtttaatatggttcaagtgtattcagat |
2623029 |
T |
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| Q |
119 |
tatgtctgcataaaatccatttttgattcattgaacaagcaagcaaccaaatagcgtcatgtcaacccgtacaagtttatgtgcaagtgctatcattcct |
218 |
Q |
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| T |
2623028 |
tatgtctgcataaaatccatttttgattcattgaacaagcaagcaaccaaatagcgtcatgtcaacccgtacaagtttatgtgcaagtgctatcattcct |
2622929 |
T |
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| Q |
219 |
tggagataaagggttaggaaggaaggactgttcctaatcttaataaacatctaaagattcataaatgtccaagatgtacctgatactgcaagaatattac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622928 |
tggagataaagggttaggaaggaaggactgttcctaatcttaataaatatctaaagattcataaatgtccaagatgtacctgatactgcaagaatattac |
2622829 |
T |
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| Q |
319 |
cgacatcattag |
330 |
Q |
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|||||||||||| |
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| T |
2622828 |
cgacatcattag |
2622817 |
T |
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