View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_17 (Length: 280)
Name: NF14778_low_17
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 47783016 - 47782756
Alignment:
| Q |
6 |
gggagatagtttgttagcaatagaaaccgatttccgaacctatgtataattcttctttattatggattaactgaccatttccgttgtttacttttatgct |
105 |
Q |
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| T |
47783016 |
gggagatagtttgttagcaatagaaaccgatttccgaacctatgtataattcttctttattatggattaactgaccatttccgttgtttacttttatgtt |
47782917 |
T |
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| Q |
106 |
gagttcttatatacttccatttcgaaaacataattcatctcattactacagggatgatcccaattagaaattaaactagcttttcattgtgaaggctatc |
205 |
Q |
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| T |
47782916 |
gagttcttatatacttccatttcgaaaacataattcatctcattactacagggatgatcccaattagaaattaaactagcttttcattgtgaaggctatc |
47782817 |
T |
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| Q |
206 |
tcgcatttcatgcttaacaaactatgaagtcgatgtaggaaaat-aataaggaagtcatag |
265 |
Q |
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| T |
47782816 |
tcgcatttcatgcttaacaaactatgaagtcgatgtaggaaaataaaaaaggaagtcatag |
47782756 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 39382103 - 39382057
Alignment:
| Q |
123 |
catttcgaaaacataattcatctcattactacagggatgatcccaat |
169 |
Q |
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| T |
39382103 |
catttcgaaaacttaattcatccaattactacagggatgatcccaat |
39382057 |
T |
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