View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_2 (Length: 860)
Name: NF14778_low_2
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 18 - 766
Target Start/End: Complemental strand, 53425127 - 53424378
Alignment:
| Q |
18 |
gtttgcagtgctgggaatgaaggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425127 |
gtttgcagtgctgggaatgaaggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttc |
53425028 |
T |
|
| Q |
118 |
agtccaatattgttttgggtagtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53425027 |
agtccaatattgttttgggtagtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatga |
53424928 |
T |
|
| Q |
218 |
tatatttctcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424927 |
tatatttctcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggc |
53424828 |
T |
|
| Q |
318 |
tgtcaagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
53424827 |
tgtcaagacaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaat |
53424728 |
T |
|
| Q |
418 |
cnnnnnnn-ttattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatag |
516 |
Q |
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| T |
53424727 |
caaaaaaaattattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatag |
53424628 |
T |
|
| Q |
517 |
atgatggttacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaa |
616 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424627 |
atgatggttacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaa |
53424528 |
T |
|
| Q |
617 |
ttatgatttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaa |
716 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424527 |
ttatgacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaa |
53424428 |
T |
|
| Q |
717 |
tttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
766 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53424427 |
tttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 453 - 696
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
| Q |
453 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
549 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||| | || |||| ||||||| |
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| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
53431744 |
T |
|
| Q |
550 |
tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac |
646 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||| || |||| | | | | |||| || ||||||||||| ||||||||| | |
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| T |
53431743 |
cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc |
53431644 |
T |
|
| Q |
647 |
aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
696 |
Q |
| |
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|||||||| ||||||| |||||||||| | |||||||||||||||||||| |
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| T |
53431643 |
aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 757 - 849
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
757 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
849 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 452 - 710
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
| Q |
452 |
gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg |
551 |
Q |
| |
|
|||||| |||| ||||||||||| ||| ||||| ||||||| |||||||| || ||||| |||||| || ||| ||| | |||| || |||| | | |
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|
| T |
48373873 |
gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg |
48373972 |
T |
|
| Q |
552 |
gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa |
648 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| || |||| | ||||| | ||||| | ||||||||||| ||||||||| ||| |
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| T |
48373973 |
gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa |
48374072 |
T |
|
| Q |
649 |
aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
710 |
Q |
| |
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|||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| |||||| |
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|
| T |
48374073 |
aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
251 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
|
| Q |
351 |
aaggtac |
357 |
Q |
| |
|
||||||| |
|
|
| T |
48373747 |
aaggtac |
48373753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 48372459 - 48372558
Alignment:
| Q |
61 |
ttaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
160 |
Q |
| |
|
|||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||||||||||| |||| ||||||| |||||||||| |||||||||| |
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| T |
48372459 |
ttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 26097609 - 26097502
Alignment:
| Q |
53 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
152 |
Q |
| |
|
||||||| ||||||| ||||||||||| | || ||||| ||||| || || |||||||| ||||||||||| |||| ||||||| |||||||||| || |
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|
| T |
26097609 |
tacagttgttaatgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtc |
26097510 |
T |
|
| Q |
153 |
aaggtaca |
160 |
Q |
| |
|
|||||||| |
|
|
| T |
26097509 |
aaggtaca |
26097502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 172
Target Start/End: Complemental strand, 53309082 - 53308963
Alignment:
| Q |
53 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
152 |
Q |
| |
|
||||||| ||||||| ||||||||||| || ||||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| |
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|
| T |
53309082 |
tacagttgttaatgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttatt |
53308983 |
T |
|
| Q |
153 |
aaggtacaatctatagcgct |
172 |
Q |
| |
|
||||||||| |||| |||| |
|
|
| T |
53308982 |
gaggtacaatttataacgct |
53308963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 53432241 - 53432124
Alignment:
| Q |
45 |
gagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaaca |
144 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| |
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|
| T |
53432241 |
gagagaagtacacttactaatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaag |
53432142 |
T |
|
| Q |
145 |
aagttatcaaggtacaat |
162 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
53432141 |
aagttatcaaggtacaat |
53432124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
459 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
510 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 53320858 - 53320744
Alignment:
| Q |
53 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
152 |
Q |
| |
|
||||||| |||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| ||| |
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|
| T |
53320858 |
tacagtttctaatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatc |
53320759 |
T |
|
| Q |
153 |
aaggtacaatctata |
167 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
53320758 |
aaggtacaaactata |
53320744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 706
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
661 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
706 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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