View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14778_low_21 (Length: 261)

Name: NF14778_low_21
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14778_low_21
NF14778_low_21
[»] chr7 (18 HSPs)
chr7 (50-261)||(26301345-26301545)
chr7 (142-260)||(19103961-19104079)
chr7 (163-261)||(26203530-26203628)
chr7 (89-261)||(26250404-26250579)
chr7 (143-257)||(26190881-26190995)
chr7 (124-261)||(26128164-26128301)
chr7 (145-261)||(26082348-26082464)
chr7 (145-261)||(26106135-26106251)
chr7 (145-261)||(26178701-26178817)
chr7 (152-257)||(26184897-26185002)
chr7 (145-257)||(26154821-26154933)
chr7 (177-261)||(26223182-26223266)
chr7 (142-261)||(26242012-26242131)
chr7 (177-261)||(26207085-26207169)
chr7 (145-257)||(26297063-26297175)
chr7 (170-261)||(26259542-26259633)
chr7 (147-229)||(26186290-26186372)
chr7 (192-261)||(26226635-26226704)
[»] chr4 (1 HSPs)
chr4 (145-261)||(44902859-44902975)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 50 - 261
Target Start/End: Original strand, 26301345 - 26301545
Alignment:
Q  50 tttctttgttttttcgttttcctatttccgccacagaaactaccattaaatatcaactctctaaccgacagcaccaagcaacaatggactctgaatctca 149  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |           |||||||||||||||||||||||||||||||||    
T  26301345 tttctttgctttttcgttttcctatttcagccacagaaactaccattaaatatcca-----------acagcaccaagcaacaatggactctgaatctca 26301433  T
Q  150 acaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26301434 acaatccaataaccaacttcatgtaatttttcttccatttccaactcctggtcatatgaatcctatgatagacacagcaagactatttgccaaacatggt 26301533  T
Q  250 gttaatgttacc 261  Q
    ||||||||||||    
T  26301534 gttaatgttacc 26301545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 19104079 - 19103961
Alignment:
Q  142 gaatctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgcca 241  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  19104079 gaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactccaggccatatgattcctatgatagacacagcaagactatttgcca 19103980  T
Q  242 aacatggtgttaatgttac 260  Q
    |||||||||||||||||||    
T  19103979 aacatggtgttaatgttac 19103961  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 26203530 - 26203628
Alignment:
Q  163 caacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26203530 caactgcatgtaacttttcttccatttccaactcctggccatatgattcctatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 26203628  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 261
Target Start/End: Original strand, 26250404 - 26250579
Alignment:
Q  89 ctaccattaaatatcaactctctaaccgacagcaccaagcaacaatggactctg---aatctcaacaatccaataaccaacttcatgtaatttttcttcc 185  Q
    ||||| ||||||||||||||||| |   | || |||||||||||||||| |||    |||||||||||||||||||||||||||||||  ||||||||||    
T  26250404 ctacccttaaatatcaactctcttagtaatagaaccaagcaacaatggattctcctcaatctcaacaatccaataaccaacttcatgttgtttttcttcc 26250503  T
Q  186 atttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    || |||| || |||| |||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  26250504 atatccatctgctggtcatatgaaccctatgattgacactgcaagactatttgctaaacatggtgttaatgttacc 26250579  T

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Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 26190881 - 26190995
Alignment:
Q  143 aatctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaa 242  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| |||||    
T  26190881 aatctcaacaatcccataacccacttcatgtaacttttcttccatttccatctcctggccatatgattcctatgattgacactgcaagactattagccaa 26190980  T
Q  243 acatggtgttaatgt 257  Q
    |||||||||||||||    
T  26190981 acatggtgttaatgt 26190995  T

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Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 26128164 - 26128301
Alignment:
Q  124 caagcaacaatggactctgaatctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagaca 223  Q
    |||||||||||||| ||| ||||||  |||| | ||||||||||||||||  |||||||| ||| ||||| |||||||||||||||||| ||||| ||||    
T  26128164 caagcaacaatggagtctcaatctctgcaattccataaccaacttcatgttgtttttctttcatatccaagtcctggccatatgaatcctatgattgaca 26128263  T
Q  224 cagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  26128264 cagcaagactatttgccatgcatggtgttaatgttacc 26128301  T

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Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 26082348 - 26082464
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||  |||||||||||||  |||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |    
T  26082348 tctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaatccaatgatagccacagcaagactatttgccatgc 26082447  T
Q  245 atggtgttaatgttacc 261  Q
    |||||||||||||||||    
T  26082448 atggtgttaatgttacc 26082464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 26106135 - 26106251
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||  |||||||||||||  |||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |    
T  26106135 tctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggccatatgaatccaatgatagccacagcaagactatttgccatgc 26106234  T
Q  245 atggtgttaatgttacc 261  Q
    |||||||||||||||||    
T  26106235 atggtgttaatgttacc 26106251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 26178701 - 26178817
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||  |    
T  26178701 tctcaacaatcccataacaaacttcatgttgtttttcttccatttccaactcctggtcatatgattcctatgatagacacagcaagactattcgccatgc 26178800  T
Q  245 atggtgttaatgttacc 261  Q
    |||||||||||||||||    
T  26178801 atggtgttaatgttacc 26178817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 26184897 - 26185002
Alignment:
Q  152 aatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgt 251  Q
    ||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||    
T  26184897 aatcccataacaaacttcatgtaatttttgttccatatccaactcctggccatatgaatcccatgatagccacatcaagactatttgcaaagcatggtgt 26184996  T
Q  252 taatgt 257  Q
    ||||||    
T  26184997 taatgt 26185002  T

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Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 26154821 - 26154933
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||| |||||||||||||||||| ||||||||||  ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| || |    
T  26154821 tctcaacaatcccataaccaacttcatgtaacttttcttccacatccaagtcctggccatatgaatcctatgattgacacagctagactatttgcaaagc 26154920  T
Q  245 atggtgttaatgt 257  Q
    |||||||||||||    
T  26154921 atggtgttaatgt 26154933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 26223182 - 26223266
Alignment:
Q  177 ttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    |||||||||||||||||||||||| ||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26223182 ttttcttccatttccaactcctggtcatatgatttcaatgattgacacagcaagactatttgccaaacatggtgttaatgttacc 26223266  T

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Target: chr7; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 26242012 - 26242131
Alignment:
Q  142 gaatctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgcca 241  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||| |||| ||  |||||||||||| || ||||| ||||| |||||||||||||| |    
T  26242012 gaatctcaacaatcccataacaaacttcatgttgtttttcttccatatccagctattggccatatgaaccctatgattgacactgcaagactatttgcaa 26242111  T
Q  242 aacatggtgttaatgttacc 261  Q
    | ||||||||||||||||||    
T  26242112 agcatggtgttaatgttacc 26242131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 26207085 - 26207169
Alignment:
Q  177 ttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    |||||| |||| ||||||||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||    
T  26207085 ttttctaccatatccaactcctggccatatgaaccctatgattgacacagcaagactatttgcaaagcatggtgttaatgttacc 26207169  T

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Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 26297063 - 26297175
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||||||||| ||||||||||  | |||||||||| |||| || |||| |||||||| || ||||| |||||||||||||||||||| || |    
T  26297063 tctcaacaatccaataacaaacttcatgttgtctttcttccatatccatctgctggtcatatgaaccctatgattgacacagcaagactatttgcaaagc 26297162  T
Q  245 atggtgttaatgt 257  Q
    |||||||| ||||    
T  26297163 atggtgttgatgt 26297175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 26259542 - 26259633
Alignment:
Q  170 atgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    |||| |||||||| || | || |||||||||||||||||| || ||||| |||||||||||||||||||| || |||||| |||||||||||    
T  26259542 atgttatttttctaccttatctaactcctggccatatgaaccctatgattgacacagcaagactatttgcaaagcatggtattaatgttacc 26259633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 26186290 - 26186372
Alignment:
Q  147 tcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaa 229  Q
    |||||||||  | |||||||||||| |||||||||||||||||||||||||||| ||||||| ||| | ||||||| ||||||    
T  26186290 tcaacaatctcacaaccaacttcatataatttttcttccatttccaactcctggtcatatgattcctaggatagacgcagcaa 26186372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 26226635 - 26226704
Alignment:
Q  192 aactcctggccatatgaatcccatgatagacacagcaagactatttgccaaacatggtgttaatgttacc 261  Q
    ||||||||| |||||||| || ||||| ||||||||||| |||||||| || ||||||||| ||||||||    
T  26226635 aactcctggtcatatgaaccctatgattgacacagcaaggctatttgcaaagcatggtgttgatgttacc 26226704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 44902859 - 44902975
Alignment:
Q  145 tctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctggccatatgaatcccatgatagacacagcaagactatttgccaaac 244  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| || |    
T  44902859 tctcaacaatccaataaccaacttcatgtagtttttcttccatatccaactcctggccatatgattcccatggtagacacagcaagactatttgcaaagc 44902958  T
Q  245 atggtgttaatgttacc 261  Q
    |||||||||||||||||    
T  44902959 atggtgttaatgttacc 44902975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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