View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14778_low_23 (Length: 243)

Name: NF14778_low_23
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14778_low_23
NF14778_low_23
[»] chr4 (8 HSPs)
chr4 (74-243)||(44972718-44972881)
chr4 (74-243)||(50131891-50132054)
chr4 (98-243)||(50131477-50131616)
chr4 (192-243)||(26296644-26296695)
chr4 (188-243)||(27382442-27382497)
chr4 (188-242)||(25993825-25993879)
chr4 (187-220)||(10542859-10542892)
chr4 (85-241)||(37480686-37480847)
[»] chr7 (5 HSPs)
chr7 (74-243)||(17199240-17199412)
chr7 (74-243)||(6057092-6057255)
chr7 (85-243)||(23962628-23962791)
chr7 (74-197)||(46867554-46867677)
chr7 (153-243)||(31913793-31913886)
[»] chr3 (6 HSPs)
chr3 (74-243)||(41623977-41624137)
chr3 (74-243)||(5126127-5126293)
chr3 (74-243)||(5133311-5133477)
chr3 (115-190)||(54093078-54093153)
chr3 (188-242)||(26449044-26449098)
chr3 (188-243)||(54093011-54093066)
[»] chr2 (7 HSPs)
chr2 (74-243)||(14000123-14000286)
chr2 (80-243)||(861944-862112)
chr2 (74-243)||(4416580-4416765)
chr2 (188-242)||(11315095-11315149)
chr2 (188-243)||(40097871-40097926)
chr2 (188-242)||(10716642-10716696)
chr2 (85-186)||(39280750-39280853)
[»] chr1 (1 HSPs)
chr1 (74-243)||(43868929-43869092)
[»] chr6 (2 HSPs)
chr6 (74-239)||(25171724-25171905)
chr6 (85-241)||(11164106-11164267)
[»] chr8 (4 HSPs)
chr8 (85-243)||(15145398-15145561)
chr8 (188-242)||(9184712-9184766)
chr8 (199-242)||(11721523-11721566)
chr8 (85-202)||(44526964-44527086)
[»] scaffold0204 (1 HSPs)
scaffold0204 (80-243)||(30103-30271)
[»] chr5 (1 HSPs)
chr5 (189-231)||(27349482-27349524)
[»] scaffold0129 (1 HSPs)
scaffold0129 (153-240)||(4785-4875)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 44972881 - 44972718
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  44972881 gggaggaaacgaacatgactgaatagaaaatgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacgaaatcttttgcaatgttcctc 44972782  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    |||||||||||||      ||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  44972781 accgtagatgatg------atgatgaaggttttagcgagaagaagaaaggtcagagacgtgtttgatgtt 44972718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 50132054 - 50131891
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||  |  |||| |||  ||||||||||||||||||||    
T  50132054 gggagaaaacgaacatgattgaatagaaaacgaacatgaggcgttaacttaagaaacgatgaaatcttcagtcaaaacgaaatcttttgcaatgttcctc 50131955  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     ||||||||  |      |||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  50131954 gccgtagatatt------gatgatgaaggttttagcgggaaggagaaaggtcagggacgtgtttgatgtt 50131891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 50131616 - 50131477
Alignment:
Q  98 agaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagatgatgatgaagatgat 197  Q
    |||||||||||| ||||||||| ||||||||||||||||||  |  |||| ||| ||||||||||||||||||||| | ||||||  |      ||||||    
T  50131616 agaaaacgaacatgaggcgttaacttaagaaacgacgaaatcttcagtcaaaacggaatcttttgcaatgttcctcgctgtagatatt------gatgat 50131523  T
Q  198 taaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     |||||||||||| ||||||||||||||||||||||||||||||||    
T  50131522 gaaggttttagcgggaaggagaaaggtcagggacgtgtttgatgtt 50131477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 26296644 - 26296695
Alignment:
Q  192 gatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    |||||| |||||||||||| ||| || |||||||||||||||||||||||||    
T  26296644 gatgatgaaggttttagcgggaaagataaaggtcagggacgtgtttgatgtt 26296695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 27382497 - 27382442
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||| |||| ||||    
T  27382497 tgaagttgatgaaggttttagcgggaaggagaaaggtcagggacgtttttgttgtt 27382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 25993879 - 25993825
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||| | |||||||| ||| ||||||||||||| |||||||||||||||||    
T  25993879 tgaagatggtgaaggttttggcgggaaggagaaaggttagggacgtgtttgatgt 25993825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 10542892 - 10542859
Alignment:
Q  187 atgaagatgattaaggttttagcgagaaggagaa 220  Q
    ||||||||||| ||||||||||||||||||||||    
T  10542892 atgaagatgatgaaggttttagcgagaaggagaa 10542859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 37480686 - 37480847
Alignment:
Q  85 aacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||| ||||| ||||||||||| ||  |||||||||||  |||| ||||||||  | | | | ||| || |||||||||| ||||||| ||| ||||    
T  37480686 aacatgattgaatggaaaacgaacaggaacggcgttaccttttgaaatgacgaaatcttctattaaaactgattcttttgcaacgttcctcgccggagat 37480785  T
Q  183 ga---tgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatg 241  Q
    ||   || |||||||||| |||| ||  ||| |||| |||| ||||||||| || |||||||    
T  37480786 gatgctggtgaagatgatgaagggttaggcgggaagaagaacggtcagggatgtttttgatg 37480847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 17199412 - 17199240
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||  | ||| | |||||||||||||||||||||||||    
T  17199412 gggagaaaacgaacatgactgaataaaaaacgaacatgaggcgtaaccttaagaaacgacgaaatcttctgttaaaacagaatcttttgcaatgttcctc 17199313  T
Q  174 accgta---gatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     |||||   |||||||||||||||||| |||||||||||| |||||||||   ||||||||||||||||||||    
T  17199312 gccgtaaatgatgatgatgaagatgatgaaggttttagcgggaaggagaataatcagggacgtgtttgatgtt 17199240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 6057255 - 6057092
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   | ||||| |||| ||||||||||||||| ||||    
T  6057255 gggagaaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctc 6057156  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     || |||||||||      ||||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  6057155 gccatagatgatg------atgatgaaggttttagcgggaaggagaaaggtcagggacgtgtatgatgtt 6057092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 23962791 - 23962628
Alignment:
Q  85 aacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||||||||| ||||||||||| ||  | |||||||||| |||| ||||||||  | | ||| ||| ||||||||||||| ||||||| ||| ||||    
T  23962791 aacatgactgaatggaaaacgaacaggaacgacgttaccttatgaaatgacgaaatcttctatcaaaactgaatcttttgcaacgttcctcgccggagat 23962692  T
Q  183 gatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    ||||   ||||||||||| |||| ||||||| ||||||||| ||||||||| || |||||||||    
T  23962691 gatgttgatgaagatgatgaagggtttagcgggaaggagaatggtcagggatgtttttgatgtt 23962628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 46867554 - 46867677
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| ||||||||||||| ||||| |||| | ||| |||| || ||||||||||||||| ||||  | ||| | ||  |||||||||||||||||||||    
T  46867554 gggagaaaacgaacatgacggaatacaaaatggacatgaggtgtaaccttaagaaacgacaaaatcttctgttaaaatggaatcttttgcaatgttcctc 46867653  T
Q  174 accgtagatgatgatgaagatgat 197  Q
     |||||||||||||||| ||||||    
T  46867654 gccgtagatgatgatgatgatgat 46867677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 31913886 - 31913793
Alignment:
Q  153 gaatcttttgcaatgttcctcaccgtagatgatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    ||||||||||||||||||||| ||  ||||||||   ||||||||||| || ||||||||| |||| ||||  |||||||||||||||||||||    
T  31913886 gaatcttttgcaatgttcctcgccagagatgatgttgatgaagatgatgaatgttttagcgggaagaagaacagtcagggacgtgtttgatgtt 31913793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 41624137 - 41623977
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||    
T  41624137 gggagaaaacaaacatgactgaatagaaaaagaacaggaggcgttaccttaagaaacgacgaaatcgtctgtcaaaacggaatcttttgcaatgttcctc 41624038  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     |||||||||||||||         |||||||||||| ||||||||||||||| ||||||||||||||||    
T  41624037 gccgtagatgatgatg---------aaggttttagcgggaaggagaaaggtcatggacgtgtttgatgtt 41623977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 5126293 - 5126127
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||   | ||||| |||| ||||||||||||||| ||||    
T  5126293 gggagaaaacaaacatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctc 5126194  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     || |||||||||||   |||||| |||||||||| | |||||||||||||||||||||||| |||||||    
T  5126193 gccatagatgatgat---gatgatgaaggttttagtgggaaggagaaaggtcagggacgtgtatgatgtt 5126127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 5133477 - 5133311
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||   | ||||| |||| ||||||||||||||| ||||    
T  5133477 gggagaaaacaaacatgactgaatagaaaacgaacaggaggcgttaccttaataaacgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctc 5133378  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     || |||||||||||   |||||| |||||||||||| |||||||||||||||||||| ||| |||||||    
T  5133377 gccatagatgatgat---gatgatgaaggttttagcgggaaggagaaaggtcagggacatgtatgatgtt 5133311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 54093153 - 54093078
Alignment:
Q  115 cgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagatgatgatga 190  Q
    ||||||||||||||||||| ||||  | ||||| |||| ||||||||| || ||||||| ||| ||||||||||||    
T  54093153 cgttaccttaagaaacgacaaaatcttttgtcaaaacataatcttttggaaagttcctcgccggagatgatgatga 54093078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 26449044 - 26449098
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||| | ||||||||||||  |||||||||||||||| |||||||||||||    
T  26449044 tgaagatggtgaaggttttagcggaaaggagaaaggtcaggaacgtgtttgatgt 26449098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 54093066 - 54093011
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    |||| ||||| |||||||||||| ||||||||||||||| |||||| ||| |||||    
T  54093066 tgaaaatgatgaaggttttagcgggaaggagaaaggtcatggacgttttttatgtt 54093011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 14000286 - 14000123
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||| |||| || ||||| ||| |||||||||||||||||||||    
T  14000286 gggagcaaacgaacatgactgaatagaaaacgaacagattgcgttaccttaagaaacgacaaaatcgtctgtcaaaacggaatcttttgcaatgttcctc 14000187  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     |||||      |||||||||||| ||||||||| || |||||||||||||||||| |||||||||||||    
T  14000186 gccgta------gatgaagatgatgaaggttttaacgggaaggagaaaggtcaggggcgtgtttgatgtt 14000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 861944 - 862112
Alignment:
Q  80 aaacgaacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccg 177  Q
    |||| ||| ||||||||| |||||| |||| ||  |||||||||||| |||| ||||||||  |   ||| ||| ||||||||||||| |||||||| ||    
T  861944 aaacaaacgtgactgaatggaaaacaaacaggaacggcgttaccttatgaaatgacgaaatcttccatcaaaactgaatcttttgcaacgttcctcatcg 862043  T
Q  178 tagatgatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     ||||||||   ||||||||||| |||| ||||||| ||||||||| |||||| || || |||||||||    
T  862044 gagatgatgttgatgaagatgatgaagggtttagcgggaaggagaacggtcagagatgtttttgatgtt 862112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 4416580 - 4416765
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcc 171  Q
    ||||| ||||||||| |||| | | ||||||||||| ||  | ||||||||||||||||||| ||||  | ||||| ||| ||||||||||||| ||| |    
T  4416580 gggagaaaacgaacaagacttactggaaaacgaacaggaacgacgttaccttaagaaacgacaaaatcttttgtcaaaacggaatcttttgcaacgtttc 4416679  T
Q  172 tcaccgtagatgatgatga--------------agatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    |||||| ||||||||||||              ||||||| |||| |||||||  ||||||||||||||||||||| |||||||||    
T  4416680 tcaccggagatgatgatgattttggagaggtgaagatgatgaaggatttagcggaaaggagaaaggtcagggacgtttttgatgtt 4416765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 11315095 - 11315149
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  11315095 tgaagatgatgaaggttttagcaggaaggagaaaggtcagggacgtgtttgatgt 11315149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 40097926 - 40097871
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    |||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||    
T  40097926 tgaagatgatgaaggttctagcgggaaggagaaaggtcagggacatgtttgatgtt 40097871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 10716642 - 10716696
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||||| ||| |||||||  ||||||||||||||| |||||||||||||||    
T  10716642 tgaagatgatgaagattttagcaggaaggagaaaggtcaaggacgtgtttgatgt 10716696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 39280853 - 39280750
Alignment:
Q  85 aacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||| ||||| ||||||||||| ||  |||||||||||  |||| || |||||  | | ||| ||| || |||||||||| ||||||||||| ||||    
T  39280853 aacatgattgaatggaaaacgaacaggaacggcgttaccttttgaaatgatgaaatcttctatcaaaactgattcttttgcaacgttcctcaccggagat 39280754  T
Q  183 gatg 186  Q
    ||||    
T  39280753 gatg 39280750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 43869092 - 43868929
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaagaggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctc 173  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||   | ||||| |||| ||||||||||||||| ||||    
T  43869092 gggagaaaacaaacatgactgaatagaaaacgaacaggaggcgttaccttaataaatgacgaaagcttctgtcaaaacaaaatcttttgcaatgtacctc 43868993  T
Q  174 accgtagatgatgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     || |||||||||      ||||| |||||||||||| ||||||||||||||| |||||||| |||||||    
T  43868992 gccatagatgatg------atgatgaaggttttagcgggaaggagaaaggtcatggacgtgtatgatgtt 43868929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 25171724 - 25171905
Alignment:
Q  74 gggaggaaacgaacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcc 171  Q
    ||||| ||||||||| |||| ||| ||||||||||| ||  |||||||||||||||||||| |||||  | ||||| ||| |||||||||||||||||||    
T  25171724 gggagaaaacgaacaagacttaatggaaaacgaacaggaacggcgttaccttaagaaacgatgaaatcttgtgtcaaaacggaatcttttgcaatgttcc 25171823  T
Q  172 tcaccgtagatgat--------------gatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttga 239  Q
    |  ||| |||||||              | |||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  25171824 ttgccggagatgataatgattttggagaggtgaagatgatgaaggttttagcgggaaggagaaaggtcagggacgtttttga 25171905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 11164267 - 11164106
Alignment:
Q  85 aacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||| ||||| ||||||||||| ||  | |||||||||  |||| ||||||||  | | ||| ||| || |||||||||| ||||||| ||| ||||    
T  11164267 aacatgattgaatggaaaacgaacaggaacgacgttaccttttgaaatgacgaaatcttctatcaaaactgactcttttgcaacgttcctcgccggagat 11164168  T
Q  183 gatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatg 241  Q
    ||||   ||||||||||| |||| ||  ||| |||| |||| ||||||||| || |||||||    
T  11164167 gatgctgatgaagatgatgaagggttaggcgggaagaagaacggtcagggatgtttttgatg 11164106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 15145398 - 15145561
Alignment:
Q  85 aacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||||||| | ||||||||||| ||  | |||||||||| |||| || |||||  | | ||| ||| ||||||||||||| ||||||| ||| ||||    
T  15145398 aacatgactgattggaaaacgaacaggaatgacgttaccttatgaaatgatgaaatcttctatcaaaactgaatcttttgcaacgttcctcgccggagat 15145497  T
Q  183 gatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
    ||||   ||||||||||| || | ||||||| ||||||||| ||||||||| || |||||||||    
T  15145498 gatgctgatgaagatgatgaatggtttagcgggaaggagaacggtcagggatgtttttgatgtt 15145561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 9184766 - 9184712
Alignment:
Q  188 tgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||||| |||||||||||| ||||||||||| ||| |||||| ||||||||    
T  9184766 tgaagatgatgaaggttttagcgggaaggagaaagatcatggacgtatttgatgt 9184712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 11721523 - 11721566
Alignment:
Q  199 aaggttttagcgagaaggagaaaggtcagggacgtgtttgatgt 242  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||    
T  11721523 aaggttttagcgggaaggagaaagatcagggacgtatttgatgt 11721566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 44527086 - 44526964
Alignment:
Q  85 aacatgactgaatagaaaacgaacaagag--gcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccgtagat 182  Q
    ||||||| ||||| ||||||||||| ||   ||||||||||  |||||||||||||  | | ||| ||| || |||||||||| ||||||| ||| ||||    
T  44527086 aacatgattgaatggaaaacgaacaggaacagcgttaccttttgaaacgacgaaatcttctatcaaaactgattcttttgcaacgttcctcgccggagat 44526987  T
Q  183 ga---tgatgaagatgattaagg 202  Q
    ||   ||||||||||||| ||||    
T  44526986 gatgctgatgaagatgatgaagg 44526964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 30103 - 30271
Alignment:
Q  80 aaacgaacatgactgaatagaaaacgaacaaga--ggcgttaccttaagaaacgacgaaattgtatgtcataacagaatcttttgcaatgttcctcaccg 177  Q
    |||| ||||||||||||| ||||| ||| | ||  |||||||||||| |||| ||||||||  | | ||| ||  ||||||||||||| ||||||| |||    
T  30103 aaacaaacatgactgaatggaaaaagaataggaacggcgttaccttatgaaatgacgaaatcttctatcaaaattgaatcttttgcaacgttcctcgccg 30202  T
Q  178 tagatgatg---atgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgatgtt 243  Q
     ||||||||   ||||||||||| |||| ||||||| ||||||||| | |||| || || |||||||||    
T  30203 gagatgatgttgatgaagatgatgaagggtttagcgggaaggagaacgatcagagatgtttttgatgtt 30271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 27349524 - 27349482
Alignment:
Q  189 gaagatgattaaggttttagcgagaaggagaaaggtcagggac 231  Q
    |||| |||| |||||||||||||||||||||| ||||||||||    
T  27349524 gaaggtgatgaaggttttagcgagaaggagaatggtcagggac 27349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 4875 - 4785
Alignment:
Q  153 gaatcttttgcaatgttcctcaccgtagatga---tgatgaagatgattaaggttttagcgagaaggagaaaggtcagggacgtgtttgat 240  Q
    |||||||||||||||||||||  || ||||||   ||||||||||||| || ||||||  | |||| ||||  |||||||| |||||||||    
T  4875 gaatcttttgcaatgttcctcgtcgaagatgatgctgatgaagatgatgaatgttttactgggaagaagaacagtcagggatgtgtttgat 4785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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