View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14778_low_26 (Length: 238)
Name: NF14778_low_26
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 42557752 - 42557535
Alignment:
| Q |
18 |
ctgatattattacaccattgataacagtttgatctttcacgatacccagatcaatgagtattattgaaggagnnnnnnnnctttcttaaaaactttgagg |
117 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42557752 |
ctgatattattacaccattgataacggtttagtctttcacgatacccagatcaatgagtattattgaaggagttttttttctttcttaaaaactttgagg |
42557653 |
T |
|
| Q |
118 |
aagacatgatttgttttcctggtttttctattaccaataactcagatctagaagtatcacactgatctgagcattattttctgaagtaaaaaattgggaa |
217 |
Q |
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||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||| |
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| T |
42557652 |
aagacgtgatttgttttcctggtttttctattatcattaactcagatctagaagtatcacattgatctgagcattatttccttaagtaaatcattgggaa |
42557553 |
T |
|
| Q |
218 |
aaacaagaataagatctg |
235 |
Q |
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|||||||||||||||||| |
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| T |
42557552 |
aaacaagaataagatctg |
42557535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 539067 - 539262
Alignment:
| Q |
19 |
tgatattattacaccattgataacagtttgatctttcacgatacccagatcaatgagtattattgaaggagnnnnnnnnctttcttaaaaactttgagga |
118 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
539067 |
tgatattattacaccattgataatggtttgatctttcacgatacccagatcaatgagtattattgaaggagttttttctctttcttaaaaactttgagga |
539166 |
T |
|
| Q |
119 |
agacatgatttgttttcctggtttttctattaccaataactcagatctagaagtatcacactgatctgagcattattttctgaagtaaaaaattgg |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
539167 |
agacatgatttgttttcctgatttttctattaccaataactcagatctagaagtatcacactcatctgagcattatttcctgaaataaaaaattgg |
539262 |
T |
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