View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14778_low_27 (Length: 233)
Name: NF14778_low_27
Description: NF14778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14778_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 2245934 - 2245735
Alignment:
| Q |
17 |
atctccgaaacccaacttagttggatctttcaaatttggaaaatttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagct |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245934 |
atctccaaaacccaacttagttggatctttcaaatttggaaaatttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagct |
2245835 |
T |
|
| Q |
117 |
gcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245834 |
gcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtctcactc |
2245735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 25986063 - 25985946
Alignment:
| Q |
88 |
tataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccac |
187 |
Q |
| |
|
||||||| || | ||||||||| |||| || |||||||||| ||| |||| |||||||||| || ||||||||| || ||||| |||||||| || |
|
|
| T |
25986063 |
tataagcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaac |
25985964 |
T |
|
| Q |
188 |
ccattttccccagtgtct |
205 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
25985963 |
ccattttccccaatgtct |
25985946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 33470041 - 33469909
Alignment:
| Q |
84 |
agcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcag |
183 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| ||||||| || ||| |||| |||||||| | ||| ||| |||| ||| ||||| ||||||| |
|
|
| T |
33470041 |
agcttataagcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcag |
33469942 |
T |
|
| Q |
184 |
ccacccattttccccagtgtctctgtctcactc |
216 |
Q |
| |
|
| ||||||||||||||||| || |||||||||| |
|
|
| T |
33469941 |
caacccattttccccagtgcctttgtctcactc |
33469909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University